miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9160 5' -57.5 NC_002512.2 + 90903 0.66 0.932775
Target:  5'- -cGAC-CUGUCGaUGGagcuguucuccaugcUGACGGGCGCGa -3'
miRNA:   3'- aaUUGcGGCAGC-GCC---------------ACUGCUCGCGC- -5'
9160 5' -57.5 NC_002512.2 + 199787 0.66 0.932775
Target:  5'- -gAACGCCaUCGCGG-GacagggauguuuaccGCGGGgGCGg -3'
miRNA:   3'- aaUUGCGGcAGCGCCaC---------------UGCUCgCGC- -5'
9160 5' -57.5 NC_002512.2 + 11337 0.66 0.930813
Target:  5'- -gGACGCCG--GCGGgaGGCGAgaGCGCa -3'
miRNA:   3'- aaUUGCGGCagCGCCa-CUGCU--CGCGc -5'
9160 5' -57.5 NC_002512.2 + 90646 0.66 0.930813
Target:  5'- -cGGCGCCGcggcCGCGGUcucggagucGGCGGcCGCGg -3'
miRNA:   3'- aaUUGCGGCa---GCGCCA---------CUGCUcGCGC- -5'
9160 5' -57.5 NC_002512.2 + 9020 0.66 0.930813
Target:  5'- -gAGCGCCGaggcccCGCGGacGACGuAGaCGCGa -3'
miRNA:   3'- aaUUGCGGCa-----GCGCCa-CUGC-UC-GCGC- -5'
9160 5' -57.5 NC_002512.2 + 200829 0.66 0.930813
Target:  5'- -gGACGCgaagGUCaGCGGgGGCGcGGCGCGu -3'
miRNA:   3'- aaUUGCGg---CAG-CGCCaCUGC-UCGCGC- -5'
9160 5' -57.5 NC_002512.2 + 204073 0.66 0.930813
Target:  5'- -gGACGUCGUCgGCGG-GAUGGucuaCGCGg -3'
miRNA:   3'- aaUUGCGGCAG-CGCCaCUGCUc---GCGC- -5'
9160 5' -57.5 NC_002512.2 + 198046 0.66 0.930813
Target:  5'- -gGACGCgGUCGUcacaGG-GACGucucGCGCGu -3'
miRNA:   3'- aaUUGCGgCAGCG----CCaCUGCu---CGCGC- -5'
9160 5' -57.5 NC_002512.2 + 126658 0.66 0.930813
Target:  5'- ----gGCCGUCGaCGGgcGGCGA-CGCGa -3'
miRNA:   3'- aauugCGGCAGC-GCCa-CUGCUcGCGC- -5'
9160 5' -57.5 NC_002512.2 + 149252 0.66 0.930813
Target:  5'- ---cCGCCGcCGCGGacggccgGACGgguacgacgaggAGCGCGa -3'
miRNA:   3'- aauuGCGGCaGCGCCa------CUGC------------UCGCGC- -5'
9160 5' -57.5 NC_002512.2 + 147173 0.66 0.930813
Target:  5'- -aGACGCCGgaaCGCGGgcccGCGccGCGCa -3'
miRNA:   3'- aaUUGCGGCa--GCGCCac--UGCu-CGCGc -5'
9160 5' -57.5 NC_002512.2 + 111206 0.66 0.930813
Target:  5'- -cGGCGCCGaCGuCGGgacagacgaUGACGGGCGg- -3'
miRNA:   3'- aaUUGCGGCaGC-GCC---------ACUGCUCGCgc -5'
9160 5' -57.5 NC_002512.2 + 90535 0.66 0.929819
Target:  5'- -gAACGCgGUgggggaggaggaGCGGgagGACGAGgGCGa -3'
miRNA:   3'- aaUUGCGgCAg-----------CGCCa--CUGCUCgCGC- -5'
9160 5' -57.5 NC_002512.2 + 52774 0.66 0.927803
Target:  5'- cUGGCGCacccggaccuccugGUCGCGGaGACGcAGCGgGg -3'
miRNA:   3'- aAUUGCGg-------------CAGCGCCaCUGC-UCGCgC- -5'
9160 5' -57.5 NC_002512.2 + 184585 0.66 0.927803
Target:  5'- ----gGCCGgcagggCgGCGGUccguccgacccgcgaGACGAGCGCGa -3'
miRNA:   3'- aauugCGGCa-----G-CGCCA---------------CUGCUCGCGC- -5'
9160 5' -57.5 NC_002512.2 + 149223 0.66 0.925752
Target:  5'- ---cCGCCGcCGCGGgaccGACGgacccGGCGCc -3'
miRNA:   3'- aauuGCGGCaGCGCCa---CUGC-----UCGCGc -5'
9160 5' -57.5 NC_002512.2 + 33001 0.66 0.925752
Target:  5'- aUGACGCCGUcgaugagcaucCGCGGcagagcGACGGGCa-- -3'
miRNA:   3'- aAUUGCGGCA-----------GCGCCa-----CUGCUCGcgc -5'
9160 5' -57.5 NC_002512.2 + 50019 0.66 0.925752
Target:  5'- ---gUGCaCGUCGUcGUGACGgugGGCGCGc -3'
miRNA:   3'- aauuGCG-GCAGCGcCACUGC---UCGCGC- -5'
9160 5' -57.5 NC_002512.2 + 98275 0.66 0.925752
Target:  5'- -cGugGCCGg-GCGG-GcCGGGCGCu -3'
miRNA:   3'- aaUugCGGCagCGCCaCuGCUCGCGc -5'
9160 5' -57.5 NC_002512.2 + 70801 0.66 0.925752
Target:  5'- ---uCGCCGUUGCGcagguuggggGAgGGGCGCGu -3'
miRNA:   3'- aauuGCGGCAGCGCca--------CUgCUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.