miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9162 3' -46.7 NC_002512.2 + 222303 0.66 0.999996
Target:  5'- -aCcgCUgcCGCCGGAgGCGGUACcGGa -3'
miRNA:   3'- aaGuaGAauGUGGCUUaCGCUAUG-CC- -5'
9162 3' -46.7 NC_002512.2 + 226442 0.66 0.999996
Target:  5'- cUUCGUCgccguCACCGAccagccccGCGAgGCGGg -3'
miRNA:   3'- -AAGUAGaau--GUGGCUua------CGCUaUGCC- -5'
9162 3' -46.7 NC_002512.2 + 133302 0.66 0.999995
Target:  5'- aUCAUCgaagACGCCGGcgaucuuccUGUaGAUGCGGa -3'
miRNA:   3'- aAGUAGaa--UGUGGCUu--------ACG-CUAUGCC- -5'
9162 3' -46.7 NC_002512.2 + 112877 0.66 0.999995
Target:  5'- aUgAUCUUGCGCCcgcccUGCG-UGCGGc -3'
miRNA:   3'- aAgUAGAAUGUGGcuu--ACGCuAUGCC- -5'
9162 3' -46.7 NC_002512.2 + 91878 0.66 0.999995
Target:  5'- -cCGUCcgGCGCgGGcgGCGGcGCGGc -3'
miRNA:   3'- aaGUAGaaUGUGgCUuaCGCUaUGCC- -5'
9162 3' -46.7 NC_002512.2 + 141275 0.66 0.999995
Target:  5'- gUUCGUCccgACGCCGGccGCGcgcACGGc -3'
miRNA:   3'- -AAGUAGaa-UGUGGCUuaCGCua-UGCC- -5'
9162 3' -46.7 NC_002512.2 + 76016 0.66 0.999993
Target:  5'- cUUCAUCgugagGCGCCGA---CGAcGCGGa -3'
miRNA:   3'- -AAGUAGaa---UGUGGCUuacGCUaUGCC- -5'
9162 3' -46.7 NC_002512.2 + 131013 0.66 0.999993
Target:  5'- cUUCGUCUUcgacGCGCuCGAggGCGu--CGGg -3'
miRNA:   3'- -AAGUAGAA----UGUG-GCUuaCGCuauGCC- -5'
9162 3' -46.7 NC_002512.2 + 34900 0.66 0.999993
Target:  5'- gUCGcccUCUUGCGCCGAGaggagGaCGAgacgACGGc -3'
miRNA:   3'- aAGU---AGAAUGUGGCUUa----C-GCUa---UGCC- -5'
9162 3' -46.7 NC_002512.2 + 130570 0.66 0.99999
Target:  5'- gUUCGUCgUAgGCCGcc-GCGAgcggGCGGg -3'
miRNA:   3'- -AAGUAGaAUgUGGCuuaCGCUa---UGCC- -5'
9162 3' -46.7 NC_002512.2 + 137250 0.66 0.99999
Target:  5'- -------gACACCGGcgGCGAgcgcUGCGGg -3'
miRNA:   3'- aaguagaaUGUGGCUuaCGCU----AUGCC- -5'
9162 3' -46.7 NC_002512.2 + 82226 0.66 0.99999
Target:  5'- gUCGUC--GCGCCcccgcgaggagGGAUGCGAagagGCGGg -3'
miRNA:   3'- aAGUAGaaUGUGG-----------CUUACGCUa---UGCC- -5'
9162 3' -46.7 NC_002512.2 + 122954 0.66 0.99999
Target:  5'- cUCGUCUU-CACCGcgcucGUGCgGGUGCGc -3'
miRNA:   3'- aAGUAGAAuGUGGCu----UACG-CUAUGCc -5'
9162 3' -46.7 NC_002512.2 + 84254 0.67 0.999986
Target:  5'- -gCAUCUcgACGCgGAagGCGGgcaGCGGg -3'
miRNA:   3'- aaGUAGAa-UGUGgCUuaCGCUa--UGCC- -5'
9162 3' -46.7 NC_002512.2 + 162987 0.67 0.999986
Target:  5'- cUCAUCgugUACAUCGGAUGgCGuuccucgaGCGGc -3'
miRNA:   3'- aAGUAGa--AUGUGGCUUAC-GCua------UGCC- -5'
9162 3' -46.7 NC_002512.2 + 113706 0.67 0.999985
Target:  5'- -gCAUCUUguagugggucccgACGCgGGcgGCGAUcuGCGGg -3'
miRNA:   3'- aaGUAGAA-------------UGUGgCUuaCGCUA--UGCC- -5'
9162 3' -46.7 NC_002512.2 + 82038 0.67 0.999964
Target:  5'- --gGUC--GCGCCGGcgGCGGUcgcgGCGGg -3'
miRNA:   3'- aagUAGaaUGUGGCUuaCGCUA----UGCC- -5'
9162 3' -46.7 NC_002512.2 + 118477 0.67 0.999964
Target:  5'- -aCAUCgaguacgGCGCCGAGcUGCcGggGCGGg -3'
miRNA:   3'- aaGUAGaa-----UGUGGCUU-ACG-CuaUGCC- -5'
9162 3' -46.7 NC_002512.2 + 206643 0.67 0.999964
Target:  5'- aUCAUCUgcccguguuCGCCGAucGCcGUGCGGa -3'
miRNA:   3'- aAGUAGAau-------GUGGCUuaCGcUAUGCC- -5'
9162 3' -46.7 NC_002512.2 + 200938 0.67 0.999964
Target:  5'- cUCAggaUCUucUGCGCCGucgaGUGGUACGGc -3'
miRNA:   3'- aAGU---AGA--AUGUGGCuua-CGCUAUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.