Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 9162 | 5' | -45 | NC_002512.2 | + | 123980 | 0.66 | 1 |
|
Target: 5'- gUUCCGUGUACG-ACGACGgcGAGc-- -3' miRNA: 3'- -AGGGUAUAUGCgUGCUGUaaCUUauu -5' |
|||||||
| 9162 | 5' | -45 | NC_002512.2 | + | 127863 | 0.66 | 0.999999 |
|
Target: 5'- aUCCCGUGgGCGCGCGGgAc-GggUGu -3' miRNA: 3'- -AGGGUAUaUGCGUGCUgUaaCuuAUu -5' |
|||||||
| 9162 | 5' | -45 | NC_002512.2 | + | 128621 | 0.66 | 0.999999 |
|
Target: 5'- gCCCGUGUACGCuccccACGACGa------- -3' miRNA: 3'- aGGGUAUAUGCG-----UGCUGUaacuuauu -5' |
|||||||
| 9162 | 5' | -45 | NC_002512.2 | + | 24128 | 0.67 | 0.999998 |
|
Target: 5'- cUCUCGcGUGCGCGCGACAc------- -3' miRNA: 3'- -AGGGUaUAUGCGUGCUGUaacuuauu -5' |
|||||||
| 9162 | 5' | -45 | NC_002512.2 | + | 7056 | 0.67 | 0.999998 |
|
Target: 5'- cUCCCGUGUGCGuCACGucuaaauuuaacGCAUggUGGAg-- -3' miRNA: 3'- -AGGGUAUAUGC-GUGC------------UGUA--ACUUauu -5' |
|||||||
| 9162 | 5' | -45 | NC_002512.2 | + | 1761 | 0.68 | 0.999994 |
|
Target: 5'- gCCCGUcgGCGCccagcACGACGUUGc---- -3' miRNA: 3'- aGGGUAuaUGCG-----UGCUGUAACuuauu -5' |
|||||||
| 9162 | 5' | -45 | NC_002512.2 | + | 83707 | 0.68 | 0.999994 |
|
Target: 5'- gCCCAgggcgaccGUGcCGCGCGGCAgcgGGAUGAc -3' miRNA: 3'- aGGGUa-------UAU-GCGUGCUGUaa-CUUAUU- -5' |
|||||||
| 9162 | 5' | -45 | NC_002512.2 | + | 99557 | 0.69 | 0.99996 |
|
Target: 5'- gCCCAUGUGCGCuaucgggggguACGACGgcgUGGc--- -3' miRNA: 3'- aGGGUAUAUGCG-----------UGCUGUa--ACUuauu -5' |
|||||||
| 9162 | 5' | -45 | NC_002512.2 | + | 67278 | 0.7 | 0.999837 |
|
Target: 5'- gCCCAUGacGCGCugGGCGgucGAGUAGc -3' miRNA: 3'- aGGGUAUa-UGCGugCUGUaa-CUUAUU- -5' |
|||||||
| 9162 | 5' | -45 | NC_002512.2 | + | 69783 | 1.08 | 0.050293 |
|
Target: 5'- gUCCCAUAUACGCACGACAUUGAAUAAa -3' miRNA: 3'- -AGGGUAUAUGCGUGCUGUAACUUAUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home