miRNA display CGI


Results 21 - 40 of 291 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9164 3' -53.4 NC_002512.2 + 97190 0.66 0.989804
Target:  5'- cGCCCAcGAcGCCcgucuGCGGCGGcGGGcCGGg -3'
miRNA:   3'- -UGGGU-CUuUGG-----UGUCGUCuCUCuGCC- -5'
9164 3' -53.4 NC_002512.2 + 131806 0.66 0.989804
Target:  5'- gACCCc-GAACgCGCAGaagaAGAGAGuGCGGa -3'
miRNA:   3'- -UGGGucUUUG-GUGUCg---UCUCUC-UGCC- -5'
9164 3' -53.4 NC_002512.2 + 153 0.66 0.989804
Target:  5'- --gCGGAGGagGCGGCAG-GAGGCGGc -3'
miRNA:   3'- uggGUCUUUggUGUCGUCuCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 36556 0.66 0.989804
Target:  5'- aGCCCGuu--CCGCuggAGCcGGGAGGCGGc -3'
miRNA:   3'- -UGGGUcuuuGGUG---UCGuCUCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 139728 0.66 0.989804
Target:  5'- cAUCCAGGAGCaGCAGUGGcGGGACc- -3'
miRNA:   3'- -UGGGUCUUUGgUGUCGUCuCUCUGcc -5'
9164 3' -53.4 NC_002512.2 + 35943 0.66 0.989804
Target:  5'- cGCgCCAGAcgacguuccccGGCCGuCAGCGGAGuccgGGACGc -3'
miRNA:   3'- -UG-GGUCU-----------UUGGU-GUCGUCUC----UCUGCc -5'
9164 3' -53.4 NC_002512.2 + 229556 0.66 0.989804
Target:  5'- --gCGGAGGagGCGGCAG-GAGGCGGc -3'
miRNA:   3'- uggGUCUUUggUGUCGUCuCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 74865 0.66 0.989804
Target:  5'- cGCUCcGGAACCGCAcCcGGGAcGACGGg -3'
miRNA:   3'- -UGGGuCUUUGGUGUcGuCUCU-CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 21797 0.66 0.989675
Target:  5'- -aCCGGGAGCCGaGGCGG-GAagucagcGACGGg -3'
miRNA:   3'- ugGGUCUUUGGUgUCGUCuCU-------CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 21468 0.66 0.989675
Target:  5'- gGCgCCGGGAGCgGCGcccGUAGAGcauccgcAGGCGGg -3'
miRNA:   3'- -UG-GGUCUUUGgUGU---CGUCUC-------UCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 35905 0.66 0.988453
Target:  5'- uACCUGGAGAgCGCGGUcaGGAGccgccGGCGGc -3'
miRNA:   3'- -UGGGUCUUUgGUGUCG--UCUCu----CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 208576 0.66 0.988453
Target:  5'- gGCCgAGucGACgCGCAGCGGGuccGGGACGa -3'
miRNA:   3'- -UGGgUCu-UUG-GUGUCGUCU---CUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 157148 0.66 0.988453
Target:  5'- gGCCCGGGgcgggcggcgGGCCggGCGGCGuGGGcGGCGGc -3'
miRNA:   3'- -UGGGUCU----------UUGG--UGUCGU-CUCuCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 132123 0.66 0.988453
Target:  5'- cGCCCGGuAGGCCGCgAGCA---AGACGa -3'
miRNA:   3'- -UGGGUC-UUUGGUG-UCGUcucUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 123991 0.66 0.988453
Target:  5'- gACgaCGGcGAGCCcacCGGguGGGAGACGGa -3'
miRNA:   3'- -UGg-GUC-UUUGGu--GUCguCUCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 123142 0.66 0.988453
Target:  5'- gACgCGGAGcgccGCCGgGGCcGAgGAGGCGGa -3'
miRNA:   3'- -UGgGUCUU----UGGUgUCGuCU-CUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 114138 0.66 0.988453
Target:  5'- uCCgAGGAGCagcCGGCAGAG-GACGa -3'
miRNA:   3'- uGGgUCUUUGgu-GUCGUCUCuCUGCc -5'
9164 3' -53.4 NC_002512.2 + 128577 0.66 0.988453
Target:  5'- cUCCGGggGCCGacccuGC-GAGAGGcCGGg -3'
miRNA:   3'- uGGGUCuuUGGUgu---CGuCUCUCU-GCC- -5'
9164 3' -53.4 NC_002512.2 + 83452 0.66 0.988311
Target:  5'- cGCCCGGAcgaagucgugcggGGCggcgCGCAGCuucGGGGGGACGa -3'
miRNA:   3'- -UGGGUCU-------------UUG----GUGUCG---UCUCUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 84462 0.66 0.986966
Target:  5'- gUCCAGc-ACCGCGGCGGAcGAGcCGa -3'
miRNA:   3'- uGGGUCuuUGGUGUCGUCU-CUCuGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.