miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9164 5' -63.5 NC_002512.2 + 101690 0.67 0.607214
Target:  5'- cGUCCccGGUCC-CGCCGGCGGcccgCUCg -3'
miRNA:   3'- -UAGGcuCCGGGaGCGGUCGCCca--GAG- -5'
9164 5' -63.5 NC_002512.2 + 81807 0.67 0.607214
Target:  5'- --aCGAGGgCCgacgCGCC-GCGaGGUCUCc -3'
miRNA:   3'- uagGCUCCgGGa---GCGGuCGC-CCAGAG- -5'
9164 5' -63.5 NC_002512.2 + 108433 0.67 0.607214
Target:  5'- -cCCGGGGCCggggGCCGGgGGGUCc- -3'
miRNA:   3'- uaGGCUCCGGgag-CGGUCgCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 170644 0.67 0.59766
Target:  5'- uUCCGccGGCgCCUCGCCuGCGGuuucCUCg -3'
miRNA:   3'- uAGGCu-CCG-GGAGCGGuCGCCca--GAG- -5'
9164 5' -63.5 NC_002512.2 + 179789 0.67 0.59766
Target:  5'- cUUCGAccGGUCCgUCGUguGCGGGUCg- -3'
miRNA:   3'- uAGGCU--CCGGG-AGCGguCGCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 79565 0.67 0.578625
Target:  5'- -gCCGcGGCguCCUCGCC-GCcGGUCUCg -3'
miRNA:   3'- uaGGCuCCG--GGAGCGGuCGcCCAGAG- -5'
9164 5' -63.5 NC_002512.2 + 226690 0.67 0.578625
Target:  5'- -gCCG-GGCCgUCGCCcgcGGCGGcGUCg- -3'
miRNA:   3'- uaGGCuCCGGgAGCGG---UCGCC-CAGag -5'
9164 5' -63.5 NC_002512.2 + 139757 0.67 0.578625
Target:  5'- cUCCGcGGCCCUCGCgCAcCGGG-Cg- -3'
miRNA:   3'- uAGGCuCCGGGAGCG-GUcGCCCaGag -5'
9164 5' -63.5 NC_002512.2 + 101849 0.67 0.578625
Target:  5'- -gUCGGGGCCgUgcagcucuucgaCGCCggGGCGGGUCUg -3'
miRNA:   3'- uaGGCUCCGGgA------------GCGG--UCGCCCAGAg -5'
9164 5' -63.5 NC_002512.2 + 151052 0.67 0.578625
Target:  5'- cGUCaCGcGGUCCUCGaCGGCGGGggaugcggUCUCg -3'
miRNA:   3'- -UAG-GCuCCGGGAGCgGUCGCCC--------AGAG- -5'
9164 5' -63.5 NC_002512.2 + 169561 0.67 0.578625
Target:  5'- --gCGuGGCCUUCGCCGGCG--UCUCc -3'
miRNA:   3'- uagGCuCCGGGAGCGGUCGCccAGAG- -5'
9164 5' -63.5 NC_002512.2 + 170355 0.67 0.577677
Target:  5'- aGUCCGAGGUCCUgGUCGcauuaucGUGGGUgUg -3'
miRNA:   3'- -UAGGCUCCGGGAgCGGU-------CGCCCAgAg -5'
9164 5' -63.5 NC_002512.2 + 117124 0.67 0.569155
Target:  5'- --aCGGGGCCC-CGUCGGCGGcGUUcgagUCg -3'
miRNA:   3'- uagGCUCCGGGaGCGGUCGCC-CAG----AG- -5'
9164 5' -63.5 NC_002512.2 + 130214 0.67 0.569155
Target:  5'- -gCCaGuGGUCCUCGgCGGCGGGgaacCUCu -3'
miRNA:   3'- uaGG-CuCCGGGAGCgGUCGCCCa---GAG- -5'
9164 5' -63.5 NC_002512.2 + 24677 0.67 0.569155
Target:  5'- cGUCCcGGGCCgCUCgGgCGG-GGGUCUCg -3'
miRNA:   3'- -UAGGcUCCGG-GAG-CgGUCgCCCAGAG- -5'
9164 5' -63.5 NC_002512.2 + 123364 0.67 0.56821
Target:  5'- gGUCCGGGGCCgcgagaUCGUCAacccgcGCGGGgaguucuUCUCg -3'
miRNA:   3'- -UAGGCUCCGGg-----AGCGGU------CGCCC-------AGAG- -5'
9164 5' -63.5 NC_002512.2 + 99212 0.68 0.559724
Target:  5'- cUCCGcGGCCgC-CGCCGuGUGGGUCg- -3'
miRNA:   3'- uAGGCuCCGG-GaGCGGU-CGCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 72863 0.68 0.559724
Target:  5'- cUCCG-GGCCgCgUCGCCGuugucGCGGGgCUCg -3'
miRNA:   3'- uAGGCuCCGG-G-AGCGGU-----CGCCCaGAG- -5'
9164 5' -63.5 NC_002512.2 + 133980 0.68 0.550336
Target:  5'- -aUCGAGGUCCUCGUCGGCacccggccGGGcgacCUCg -3'
miRNA:   3'- uaGGCUCCGGGAGCGGUCG--------CCCa---GAG- -5'
9164 5' -63.5 NC_002512.2 + 101197 0.68 0.550336
Target:  5'- uGUCCGAgacgccGGCgUUCGCCA--GGGUCUCc -3'
miRNA:   3'- -UAGGCU------CCGgGAGCGGUcgCCCAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.