miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9165 3' -54.5 NC_002512.2 + 41044 0.66 0.984173
Target:  5'- gGCUCUgUGUCCUCACGaacGAGAa-- -3'
miRNA:   3'- -CGGGAgGCAGGAGUGCaucCUCUaug -5'
9165 3' -54.5 NC_002512.2 + 75632 0.66 0.982309
Target:  5'- cCCCUCCGcCgCUC-CGUGGaGAaccuGAUACg -3'
miRNA:   3'- cGGGAGGCaG-GAGuGCAUC-CU----CUAUG- -5'
9165 3' -54.5 NC_002512.2 + 99544 0.66 0.982309
Target:  5'- cGCCCggggUCGUgCC-CAUGUgcgcuaucGGGGGGUACg -3'
miRNA:   3'- -CGGGa---GGCA-GGaGUGCA--------UCCUCUAUG- -5'
9165 3' -54.5 NC_002512.2 + 29246 0.66 0.980284
Target:  5'- cGCagUCCGUCCUCcgACGgggacgAGGAGG-ACg -3'
miRNA:   3'- -CGggAGGCAGGAG--UGCa-----UCCUCUaUG- -5'
9165 3' -54.5 NC_002512.2 + 171222 0.66 0.978092
Target:  5'- gGCCUcuucUCUGUCCUCACcuucugAGGaAGAUGa -3'
miRNA:   3'- -CGGG----AGGCAGGAGUGca----UCC-UCUAUg -5'
9165 3' -54.5 NC_002512.2 + 91228 0.66 0.978092
Target:  5'- aGUCCaCCGUgCUCgucagggacgccGCGUacgGGGAGAUGCc -3'
miRNA:   3'- -CGGGaGGCAgGAG------------UGCA---UCCUCUAUG- -5'
9165 3' -54.5 NC_002512.2 + 221102 0.66 0.975724
Target:  5'- cGCCCUCCGgcgCCUC-CucGGGAGcuuccgACg -3'
miRNA:   3'- -CGGGAGGCa--GGAGuGcaUCCUCua----UG- -5'
9165 3' -54.5 NC_002512.2 + 108074 0.66 0.975724
Target:  5'- cGCCCcgugcgugCUGUCCacCACGUGGaAGGUACc -3'
miRNA:   3'- -CGGGa-------GGCAGGa-GUGCAUCcUCUAUG- -5'
9165 3' -54.5 NC_002512.2 + 99866 0.66 0.975724
Target:  5'- -gUCUCCGUCUUCgACGUgcuggaccgggAGGAGGcGCg -3'
miRNA:   3'- cgGGAGGCAGGAG-UGCA-----------UCCUCUaUG- -5'
9165 3' -54.5 NC_002512.2 + 101784 0.66 0.973175
Target:  5'- gGCg--CCGUCCUCGCGgcGGAGc--- -3'
miRNA:   3'- -CGggaGGCAGGAGUGCauCCUCuaug -5'
9165 3' -54.5 NC_002512.2 + 131332 0.66 0.973175
Target:  5'- gGCCgUCCGacCCUCuGCG-AGGAGAUcccGCu -3'
miRNA:   3'- -CGGgAGGCa-GGAG-UGCaUCCUCUA---UG- -5'
9165 3' -54.5 NC_002512.2 + 2285 0.67 0.967505
Target:  5'- cGCCCUCCGgCCgcugCGgGUGGcGGGGcucUGCu -3'
miRNA:   3'- -CGGGAGGCaGGa---GUgCAUC-CUCU---AUG- -5'
9165 3' -54.5 NC_002512.2 + 226524 0.67 0.964373
Target:  5'- gGCCCUgccgCCGUCCUCGauCGgAGGaAGAggaagGCg -3'
miRNA:   3'- -CGGGA----GGCAGGAGU--GCaUCC-UCUa----UG- -5'
9165 3' -54.5 NC_002512.2 + 176523 0.67 0.957487
Target:  5'- cGCCCgCUuggCCgUCACGUAGGGGAg-- -3'
miRNA:   3'- -CGGGaGGca-GG-AGUGCAUCCUCUaug -5'
9165 3' -54.5 NC_002512.2 + 188707 0.67 0.957487
Target:  5'- gGCuCCUCCG-CCUCGgCcaAGGAGAaGCa -3'
miRNA:   3'- -CG-GGAGGCaGGAGU-GcaUCCUCUaUG- -5'
9165 3' -54.5 NC_002512.2 + 128142 0.67 0.957487
Target:  5'- cGCCCgggCCaccaCCUCGCGaGGGAGAc-- -3'
miRNA:   3'- -CGGGa--GGca--GGAGUGCaUCCUCUaug -5'
9165 3' -54.5 NC_002512.2 + 143175 0.67 0.957487
Target:  5'- cGCCCUCuCGUagugcgcgcCCUgCACGaGGGuGGUGCc -3'
miRNA:   3'- -CGGGAG-GCA---------GGA-GUGCaUCCuCUAUG- -5'
9165 3' -54.5 NC_002512.2 + 105330 0.68 0.949332
Target:  5'- gGgCCUCC-UCCUCGCcgacgagGUAGGAGuugGCg -3'
miRNA:   3'- -CgGGAGGcAGGAGUG-------CAUCCUCua-UG- -5'
9165 3' -54.5 NC_002512.2 + 80744 0.68 0.947247
Target:  5'- gGCCCcgcggcggucccgggUCCcggggGUCCUCGCGgcucgAGGAGGaGCg -3'
miRNA:   3'- -CGGG---------------AGG-----CAGGAGUGCa----UCCUCUaUG- -5'
9165 3' -54.5 NC_002512.2 + 60825 0.68 0.945539
Target:  5'- cGCCg-CCGcggagccCCUCGCGcccgAGGAGAUGCc -3'
miRNA:   3'- -CGGgaGGCa------GGAGUGCa---UCCUCUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.