miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9165 5' -52.2 NC_002512.2 + 91996 0.71 0.901395
Target:  5'- -cGGGUCUCCCGCGUcGCCggCGGcGg -3'
miRNA:   3'- auUCUAGAGGGUGCGuUGGaaGUC-Ca -5'
9165 5' -52.2 NC_002512.2 + 119964 0.66 0.993926
Target:  5'- cGAGcUCUCCa--GCAGguCCUUCAGGa -3'
miRNA:   3'- aUUCuAGAGGgugCGUU--GGAAGUCCa -5'
9165 5' -52.2 NC_002512.2 + 128798 0.66 0.993926
Target:  5'- -uGGGUCUCCgGCGUggUCcgCGGGc -3'
miRNA:   3'- auUCUAGAGGgUGCGuuGGaaGUCCa -5'
9165 5' -52.2 NC_002512.2 + 25514 0.66 0.993926
Target:  5'- -cAGAUCUCCCGC-CAGCCcuugcUCAuGGc -3'
miRNA:   3'- auUCUAGAGGGUGcGUUGGa----AGU-CCa -5'
9165 5' -52.2 NC_002512.2 + 2939 0.66 0.993926
Target:  5'- --uGGcCUCCCGCGCGGCCUU--GGc -3'
miRNA:   3'- auuCUaGAGGGUGCGUUGGAAguCCa -5'
9165 5' -52.2 NC_002512.2 + 45089 0.66 0.993383
Target:  5'- aAGGGUCUCCC-CGCGGaggcccgggccacguCC-UCGGGg -3'
miRNA:   3'- aUUCUAGAGGGuGCGUU---------------GGaAGUCCa -5'
9165 5' -52.2 NC_002512.2 + 27945 0.66 0.991963
Target:  5'- --cGGUCUCCCACGU-ACC--CGGGc -3'
miRNA:   3'- auuCUAGAGGGUGCGuUGGaaGUCCa -5'
9165 5' -52.2 NC_002512.2 + 101219 0.66 0.991286
Target:  5'- cAGGGUCUCCCGCaGCAGgaggagcucgaucccCCggcccagcgUCAGGa -3'
miRNA:   3'- aUUCUAGAGGGUG-CGUU---------------GGa--------AGUCCa -5'
9165 5' -52.2 NC_002512.2 + 114625 0.66 0.990687
Target:  5'- cAGGcgCUCCC-CGCcGCCUaucguguagguggUCGGGUc -3'
miRNA:   3'- aUUCuaGAGGGuGCGuUGGA-------------AGUCCA- -5'
9165 5' -52.2 NC_002512.2 + 1827 0.67 0.988113
Target:  5'- ---cGUCUCCCGCGCcgcAGCCguccgCGGGc -3'
miRNA:   3'- auucUAGAGGGUGCG---UUGGaa---GUCCa -5'
9165 5' -52.2 NC_002512.2 + 121595 0.67 0.984841
Target:  5'- --cGAUCUCCgACGCcugcgacuUCUUCAGGc -3'
miRNA:   3'- auuCUAGAGGgUGCGuu------GGAAGUCCa -5'
9165 5' -52.2 NC_002512.2 + 124738 0.68 0.978704
Target:  5'- cAAGAUCUa-CACGCGuCCgUCGGGUg -3'
miRNA:   3'- aUUCUAGAggGUGCGUuGGaAGUCCA- -5'
9165 5' -52.2 NC_002512.2 + 188787 0.68 0.976297
Target:  5'- -cAGAUCUCgUCGCGCGACCUgucUCAccaccGGUu -3'
miRNA:   3'- auUCUAGAG-GGUGCGUUGGA---AGU-----CCA- -5'
9165 5' -52.2 NC_002512.2 + 5531 0.68 0.967888
Target:  5'- cGAGGUCUCCCGCccGCGACCccggCGcGGc -3'
miRNA:   3'- aUUCUAGAGGGUG--CGUUGGaa--GU-CCa -5'
9165 5' -52.2 NC_002512.2 + 91699 0.69 0.94952
Target:  5'- gUAGGAUgUCCgcgaugcaCACGCAGCCcggCGGGUg -3'
miRNA:   3'- -AUUCUAgAGG--------GUGCGUUGGaa-GUCCA- -5'
9165 5' -52.2 NC_002512.2 + 85717 0.69 0.945148
Target:  5'- gAGGGUUUCCUACGCGacaacuucgagaACC-UCGGGg -3'
miRNA:   3'- aUUCUAGAGGGUGCGU------------UGGaAGUCCa -5'
9165 5' -52.2 NC_002512.2 + 154223 0.69 0.944245
Target:  5'- ---cGUCUCUCGCGCGGCCggcggaaacguaUCAGGUu -3'
miRNA:   3'- auucUAGAGGGUGCGUUGGa-----------AGUCCA- -5'
9165 5' -52.2 NC_002512.2 + 57613 0.71 0.907718
Target:  5'- -cAGAUgUCCCGgGCGACCgagCGGGc -3'
miRNA:   3'- auUCUAgAGGGUgCGUUGGaa-GUCCa -5'
9165 5' -52.2 NC_002512.2 + 126132 0.72 0.858565
Target:  5'- cGAGAUCUCCUcguaGCGCc-UCUUCAGGa -3'
miRNA:   3'- aUUCUAGAGGG----UGCGuuGGAAGUCCa -5'
9165 5' -52.2 NC_002512.2 + 228385 0.66 0.993926
Target:  5'- cGAGGUgUCCgGCGUGAUCUgucCGGGg -3'
miRNA:   3'- aUUCUAgAGGgUGCGUUGGAa--GUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.