miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9166 5' -55.8 NC_002512.2 + 126767 0.66 0.959331
Target:  5'- cUUCUGCGGCCCGCgCagCCuGUGUc- -3'
miRNA:   3'- aGAGAUGCUGGGUGgGa-GGuCGCAau -5'
9166 5' -55.8 NC_002512.2 + 196859 0.66 0.95567
Target:  5'- -gUCUACGACCUGCCCgucgcucugCC-GCGg-- -3'
miRNA:   3'- agAGAUGCUGGGUGGGa--------GGuCGCaau -5'
9166 5' -55.8 NC_002512.2 + 69036 0.66 0.951793
Target:  5'- cCUCUGCGACUgCGCCCagcgccgCCGGCc--- -3'
miRNA:   3'- aGAGAUGCUGG-GUGGGa------GGUCGcaau -5'
9166 5' -55.8 NC_002512.2 + 106529 0.66 0.947694
Target:  5'- aUCUC-GCGGCCCcggACCuuggacgggggCUCCAGCGg-- -3'
miRNA:   3'- -AGAGaUGCUGGG---UGG-----------GAGGUCGCaau -5'
9166 5' -55.8 NC_002512.2 + 129964 0.66 0.947694
Target:  5'- -----cCGACgCCGCCCUUCGGCGg-- -3'
miRNA:   3'- agagauGCUG-GGUGGGAGGUCGCaau -5'
9166 5' -55.8 NC_002512.2 + 208417 0.66 0.94337
Target:  5'- gCUCUACgGGCgCCGCUC-CCGGCGc-- -3'
miRNA:   3'- aGAGAUG-CUG-GGUGGGaGGUCGCaau -5'
9166 5' -55.8 NC_002512.2 + 152322 0.67 0.93306
Target:  5'- gCUCggacgcccguggGCGACCCGCCgUCC-GCGa-- -3'
miRNA:   3'- aGAGa-----------UGCUGGGUGGgAGGuCGCaau -5'
9166 5' -55.8 NC_002512.2 + 181157 0.67 0.923799
Target:  5'- aCUCcGCGGCCaggUCCUCCAGCa--- -3'
miRNA:   3'- aGAGaUGCUGGgu-GGGAGGUCGcaau -5'
9166 5' -55.8 NC_002512.2 + 78251 0.67 0.923799
Target:  5'- cCUCggagacGCGAUCgGCCCUCCuGaCGUUGu -3'
miRNA:   3'- aGAGa-----UGCUGGgUGGGAGGuC-GCAAU- -5'
9166 5' -55.8 NC_002512.2 + 189009 0.67 0.923263
Target:  5'- cCUCUuccgcggGCGACCCucCCCUCC-GUGUc- -3'
miRNA:   3'- aGAGA-------UGCUGGGu-GGGAGGuCGCAau -5'
9166 5' -55.8 NC_002512.2 + 98351 0.67 0.92164
Target:  5'- ----gGCGGCCCcuccgccucgucuCCCUCCGGCGUc- -3'
miRNA:   3'- agagaUGCUGGGu------------GGGAGGUCGCAau -5'
9166 5' -55.8 NC_002512.2 + 98853 0.67 0.918332
Target:  5'- cCUCccccGCGGCCCcgacGCCCUCgAGCGc-- -3'
miRNA:   3'- aGAGa---UGCUGGG----UGGGAGgUCGCaau -5'
9166 5' -55.8 NC_002512.2 + 107482 0.67 0.918332
Target:  5'- aUCUCgucgccGCGACCgGCCCg-CAGCGg-- -3'
miRNA:   3'- -AGAGa-----UGCUGGgUGGGagGUCGCaau -5'
9166 5' -55.8 NC_002512.2 + 95933 0.67 0.918332
Target:  5'- cCUUgaccuUGAUCgCGCCCUCCGGCGggGg -3'
miRNA:   3'- aGAGau---GCUGG-GUGGGAGGUCGCaaU- -5'
9166 5' -55.8 NC_002512.2 + 124232 0.67 0.918332
Target:  5'- gUCUgCUGCGGCUCGCCCUaccUCGGCc--- -3'
miRNA:   3'- -AGA-GAUGCUGGGUGGGA---GGUCGcaau -5'
9166 5' -55.8 NC_002512.2 + 222295 0.68 0.89419
Target:  5'- cCUCUACGACCgCugCCgCCggaGGCGg-- -3'
miRNA:   3'- aGAGAUGCUGG-GugGGaGG---UCGCaau -5'
9166 5' -55.8 NC_002512.2 + 199261 0.68 0.887596
Target:  5'- gUCUCUggaugucggGCGGCCCgaacauccgcGCCCUCCGGUugGUg- -3'
miRNA:   3'- -AGAGA---------UGCUGGG----------UGGGAGGUCG--CAau -5'
9166 5' -55.8 NC_002512.2 + 229739 0.68 0.873763
Target:  5'- cCUCcgccgGCGcCCCGCCCggcuccCCGGCGUUu -3'
miRNA:   3'- aGAGa----UGCuGGGUGGGa-----GGUCGCAAu -5'
9166 5' -55.8 NC_002512.2 + 336 0.68 0.873763
Target:  5'- cCUCcgccgGCGcCCCGCCCggcuccCCGGCGUUu -3'
miRNA:   3'- aGAGa----UGCuGGGUGGGa-----GGUCGCAAu -5'
9166 5' -55.8 NC_002512.2 + 214068 0.69 0.859098
Target:  5'- cCUCUACGACCCcucguCCCa-CGGCGg-- -3'
miRNA:   3'- aGAGAUGCUGGGu----GGGagGUCGCaau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.