Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9166 | 5' | -55.8 | NC_002512.2 | + | 126767 | 0.66 | 0.959331 |
Target: 5'- cUUCUGCGGCCCGCgCagCCuGUGUc- -3' miRNA: 3'- aGAGAUGCUGGGUGgGa-GGuCGCAau -5' |
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9166 | 5' | -55.8 | NC_002512.2 | + | 196859 | 0.66 | 0.95567 |
Target: 5'- -gUCUACGACCUGCCCgucgcucugCC-GCGg-- -3' miRNA: 3'- agAGAUGCUGGGUGGGa--------GGuCGCaau -5' |
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9166 | 5' | -55.8 | NC_002512.2 | + | 69036 | 0.66 | 0.951793 |
Target: 5'- cCUCUGCGACUgCGCCCagcgccgCCGGCc--- -3' miRNA: 3'- aGAGAUGCUGG-GUGGGa------GGUCGcaau -5' |
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9166 | 5' | -55.8 | NC_002512.2 | + | 106529 | 0.66 | 0.947694 |
Target: 5'- aUCUC-GCGGCCCcggACCuuggacgggggCUCCAGCGg-- -3' miRNA: 3'- -AGAGaUGCUGGG---UGG-----------GAGGUCGCaau -5' |
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9166 | 5' | -55.8 | NC_002512.2 | + | 129964 | 0.66 | 0.947694 |
Target: 5'- -----cCGACgCCGCCCUUCGGCGg-- -3' miRNA: 3'- agagauGCUG-GGUGGGAGGUCGCaau -5' |
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9166 | 5' | -55.8 | NC_002512.2 | + | 208417 | 0.66 | 0.94337 |
Target: 5'- gCUCUACgGGCgCCGCUC-CCGGCGc-- -3' miRNA: 3'- aGAGAUG-CUG-GGUGGGaGGUCGCaau -5' |
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9166 | 5' | -55.8 | NC_002512.2 | + | 152322 | 0.67 | 0.93306 |
Target: 5'- gCUCggacgcccguggGCGACCCGCCgUCC-GCGa-- -3' miRNA: 3'- aGAGa-----------UGCUGGGUGGgAGGuCGCaau -5' |
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9166 | 5' | -55.8 | NC_002512.2 | + | 181157 | 0.67 | 0.923799 |
Target: 5'- aCUCcGCGGCCaggUCCUCCAGCa--- -3' miRNA: 3'- aGAGaUGCUGGgu-GGGAGGUCGcaau -5' |
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9166 | 5' | -55.8 | NC_002512.2 | + | 78251 | 0.67 | 0.923799 |
Target: 5'- cCUCggagacGCGAUCgGCCCUCCuGaCGUUGu -3' miRNA: 3'- aGAGa-----UGCUGGgUGGGAGGuC-GCAAU- -5' |
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9166 | 5' | -55.8 | NC_002512.2 | + | 189009 | 0.67 | 0.923263 |
Target: 5'- cCUCUuccgcggGCGACCCucCCCUCC-GUGUc- -3' miRNA: 3'- aGAGA-------UGCUGGGu-GGGAGGuCGCAau -5' |
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9166 | 5' | -55.8 | NC_002512.2 | + | 98351 | 0.67 | 0.92164 |
Target: 5'- ----gGCGGCCCcuccgccucgucuCCCUCCGGCGUc- -3' miRNA: 3'- agagaUGCUGGGu------------GGGAGGUCGCAau -5' |
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9166 | 5' | -55.8 | NC_002512.2 | + | 98853 | 0.67 | 0.918332 |
Target: 5'- cCUCccccGCGGCCCcgacGCCCUCgAGCGc-- -3' miRNA: 3'- aGAGa---UGCUGGG----UGGGAGgUCGCaau -5' |
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9166 | 5' | -55.8 | NC_002512.2 | + | 107482 | 0.67 | 0.918332 |
Target: 5'- aUCUCgucgccGCGACCgGCCCg-CAGCGg-- -3' miRNA: 3'- -AGAGa-----UGCUGGgUGGGagGUCGCaau -5' |
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9166 | 5' | -55.8 | NC_002512.2 | + | 95933 | 0.67 | 0.918332 |
Target: 5'- cCUUgaccuUGAUCgCGCCCUCCGGCGggGg -3' miRNA: 3'- aGAGau---GCUGG-GUGGGAGGUCGCaaU- -5' |
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9166 | 5' | -55.8 | NC_002512.2 | + | 124232 | 0.67 | 0.918332 |
Target: 5'- gUCUgCUGCGGCUCGCCCUaccUCGGCc--- -3' miRNA: 3'- -AGA-GAUGCUGGGUGGGA---GGUCGcaau -5' |
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9166 | 5' | -55.8 | NC_002512.2 | + | 222295 | 0.68 | 0.89419 |
Target: 5'- cCUCUACGACCgCugCCgCCggaGGCGg-- -3' miRNA: 3'- aGAGAUGCUGG-GugGGaGG---UCGCaau -5' |
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9166 | 5' | -55.8 | NC_002512.2 | + | 199261 | 0.68 | 0.887596 |
Target: 5'- gUCUCUggaugucggGCGGCCCgaacauccgcGCCCUCCGGUugGUg- -3' miRNA: 3'- -AGAGA---------UGCUGGG----------UGGGAGGUCG--CAau -5' |
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9166 | 5' | -55.8 | NC_002512.2 | + | 229739 | 0.68 | 0.873763 |
Target: 5'- cCUCcgccgGCGcCCCGCCCggcuccCCGGCGUUu -3' miRNA: 3'- aGAGa----UGCuGGGUGGGa-----GGUCGCAAu -5' |
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9166 | 5' | -55.8 | NC_002512.2 | + | 336 | 0.68 | 0.873763 |
Target: 5'- cCUCcgccgGCGcCCCGCCCggcuccCCGGCGUUu -3' miRNA: 3'- aGAGa----UGCuGGGUGGGa-----GGUCGCAAu -5' |
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9166 | 5' | -55.8 | NC_002512.2 | + | 214068 | 0.69 | 0.859098 |
Target: 5'- cCUCUACGACCCcucguCCCa-CGGCGg-- -3' miRNA: 3'- aGAGAUGCUGGGu----GGGagGUCGCaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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