miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 3' -51.8 NC_002512.2 + 158926 0.66 0.997656
Target:  5'- aCGGCuuCGgcgGggGCGCcGGcggCCUCUCg -3'
miRNA:   3'- -GCUGugGCa--CuuUGCGuCUa--GGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 220111 0.68 0.986951
Target:  5'- aGGCGuCCGUGAGccgccacgcgggGCgGCGGGUCCggCUCc -3'
miRNA:   3'- gCUGU-GGCACUU------------UG-CGUCUAGGa-GAG- -5'
9167 3' -51.8 NC_002512.2 + 191810 0.68 0.988453
Target:  5'- gGACACCGggcacUGAcGCGCgcgGGGUCCUUg- -3'
miRNA:   3'- gCUGUGGC-----ACUuUGCG---UCUAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 216053 0.67 0.992164
Target:  5'- gCGACgGgCGUucGggGC-CGGGUCCUCUCu -3'
miRNA:   3'- -GCUG-UgGCA--CuuUGcGUCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 76026 0.66 0.994859
Target:  5'- aGGCGCCGac-GACGCGGAcgacgccuucUCCUuCUCc -3'
miRNA:   3'- gCUGUGGCacuUUGCGUCU----------AGGA-GAG- -5'
9167 3' -51.8 NC_002512.2 + 95798 0.71 0.938092
Target:  5'- aGGCGCCGg--GGCGCGGAUCCg--- -3'
miRNA:   3'- gCUGUGGCacuUUGCGUCUAGGagag -5'
9167 3' -51.8 NC_002512.2 + 159295 0.68 0.98154
Target:  5'- -aACACCGUGAGACGUg---CCUCg- -3'
miRNA:   3'- gcUGUGGCACUUUGCGucuaGGAGag -5'
9167 3' -51.8 NC_002512.2 + 186307 0.66 0.995568
Target:  5'- gCGACGCCGUGGucaucgGCAacGUCCUCa- -3'
miRNA:   3'- -GCUGUGGCACUuug---CGUc-UAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 125022 0.67 0.991051
Target:  5'- uCGGCGCCGcccgcuGCGCgAGGUCC-CUCc -3'
miRNA:   3'- -GCUGUGGCacuu--UGCG-UCUAGGaGAG- -5'
9167 3' -51.8 NC_002512.2 + 210588 0.67 0.992164
Target:  5'- uCGAC-CCGUucgucCGgAGGUCCUCUCc -3'
miRNA:   3'- -GCUGuGGCAcuuu-GCgUCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 131925 0.66 0.996643
Target:  5'- cCGGCGCCccugcugcacgGGAGCGUAGAaCCUCa- -3'
miRNA:   3'- -GCUGUGGca---------CUUUGCGUCUaGGAGag -5'
9167 3' -51.8 NC_002512.2 + 80033 0.66 0.997232
Target:  5'- gGAC-CCGUGAAAa--AGAUCCccaUCUCc -3'
miRNA:   3'- gCUGuGGCACUUUgcgUCUAGG---AGAG- -5'
9167 3' -51.8 NC_002512.2 + 155815 0.72 0.905107
Target:  5'- gGAgGCCGUGuccgUGCAGAUCCgCUCc -3'
miRNA:   3'- gCUgUGGCACuuu-GCGUCUAGGaGAG- -5'
9167 3' -51.8 NC_002512.2 + 75542 0.72 0.917052
Target:  5'- uCGACGCCGUGGcggaggacgacGACGCGGAcgacUCCggaUCc -3'
miRNA:   3'- -GCUGUGGCACU-----------UUGCGUCU----AGGag-AG- -5'
9167 3' -51.8 NC_002512.2 + 105870 0.68 0.988453
Target:  5'- gGACGCa--GgcGCGCGGGUCCgUCUCc -3'
miRNA:   3'- gCUGUGgcaCuuUGCGUCUAGG-AGAG- -5'
9167 3' -51.8 NC_002512.2 + 103426 0.67 0.992577
Target:  5'- aGACGCCGUcgaacgcgucgucccGGuccgAGCGCGGGUCCgaggacgcggCUCg -3'
miRNA:   3'- gCUGUGGCA---------------CU----UUGCGUCUAGGa---------GAG- -5'
9167 3' -51.8 NC_002512.2 + 177840 0.66 0.994783
Target:  5'- gCGAUACCGUgucgaugGAGGCcaGCAGcUCCUCg- -3'
miRNA:   3'- -GCUGUGGCA-------CUUUG--CGUCuAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 92712 0.66 0.997232
Target:  5'- aCGACGCCGUacggacguccggGggGCGCGcucGGUCCg--- -3'
miRNA:   3'- -GCUGUGGCA------------CuuUGCGU---CUAGGagag -5'
9167 3' -51.8 NC_002512.2 + 77049 0.67 0.992164
Target:  5'- uCGACAaucUCGUGgcGCuGCuGAUCCUgCUCg -3'
miRNA:   3'- -GCUGU---GGCACuuUG-CGuCUAGGA-GAG- -5'
9167 3' -51.8 NC_002512.2 + 184204 0.67 0.991051
Target:  5'- uGACuCCccGGAcCGCGGGUUCUCUCu -3'
miRNA:   3'- gCUGuGGcaCUUuGCGUCUAGGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.