miRNA display CGI


Results 61 - 80 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 3' -51.8 NC_002512.2 + 55246 1.1 0.010697
Target:  5'- cCGACACCGUGAAACGCAGAUCCUCUCc -3'
miRNA:   3'- -GCUGUGGCACUUUGCGUCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 186307 0.66 0.995568
Target:  5'- gCGACGCCGUGGucaucgGCAacGUCCUCa- -3'
miRNA:   3'- -GCUGUGGCACUuug---CGUc-UAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 194336 0.66 0.997656
Target:  5'- aCGGUugCGUGGucGCGCacgagggagGGGUCCUCUUc -3'
miRNA:   3'- -GCUGugGCACUu-UGCG---------UCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 219878 0.66 0.997656
Target:  5'- aCGAgGCCGgggucgGAGACGagccGAccgcccUCCUCUCg -3'
miRNA:   3'- -GCUgUGGCa-----CUUUGCgu--CU------AGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 158926 0.66 0.997656
Target:  5'- aCGGCuuCGgcgGggGCGCcGGcggCCUCUCg -3'
miRNA:   3'- -GCUGugGCa--CuuUGCGuCUa--GGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 120758 0.66 0.997656
Target:  5'- aCGugGCCuGgaagGAGAgGCAGAcCCUCa- -3'
miRNA:   3'- -GCugUGG-Ca---CUUUgCGUCUaGGAGag -5'
9167 3' -51.8 NC_002512.2 + 119566 0.66 0.997656
Target:  5'- gGGCggACCGcgGGAGCccgGCGGGUCCcCUCg -3'
miRNA:   3'- gCUG--UGGCa-CUUUG---CGUCUAGGaGAG- -5'
9167 3' -51.8 NC_002512.2 + 134687 0.66 0.997232
Target:  5'- gGACGCgCGac---CGCGGAcgUCCUCUCg -3'
miRNA:   3'- gCUGUG-GCacuuuGCGUCU--AGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 112311 0.66 0.997232
Target:  5'- uCGAUGCCGgu-GACGUAGGUCagCUCc -3'
miRNA:   3'- -GCUGUGGCacuUUGCGUCUAGgaGAG- -5'
9167 3' -51.8 NC_002512.2 + 92712 0.66 0.997232
Target:  5'- aCGACGCCGUacggacguccggGggGCGCGcucGGUCCg--- -3'
miRNA:   3'- -GCUGUGGCA------------CuuUGCGU---CUAGGagag -5'
9167 3' -51.8 NC_002512.2 + 80033 0.66 0.997232
Target:  5'- gGAC-CCGUGAAAa--AGAUCCccaUCUCc -3'
miRNA:   3'- gCUGuGGCACUUUgcgUCUAGG---AGAG- -5'
9167 3' -51.8 NC_002512.2 + 131925 0.66 0.996643
Target:  5'- cCGGCGCCccugcugcacgGGAGCGUAGAaCCUCa- -3'
miRNA:   3'- -GCUGUGGca---------CUUUGCGUCUaGGAGag -5'
9167 3' -51.8 NC_002512.2 + 144294 0.66 0.996195
Target:  5'- aGGCACCc--GAACGCGGAcgCgCUCUCc -3'
miRNA:   3'- gCUGUGGcacUUUGCGUCUa-G-GAGAG- -5'
9167 3' -51.8 NC_002512.2 + 210588 0.67 0.992164
Target:  5'- uCGAC-CCGUucgucCGgAGGUCCUCUCc -3'
miRNA:   3'- -GCUGuGGCAcuuu-GCgUCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 133776 0.66 0.995568
Target:  5'- uCGACACCcagGUGGccCGCgAGAUCUUCg- -3'
miRNA:   3'- -GCUGUGG---CACUuuGCG-UCUAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 169184 0.66 0.994859
Target:  5'- ---gACCGUGAAGUGCGGGUCCa--- -3'
miRNA:   3'- gcugUGGCACUUUGCGUCUAGGagag -5'
9167 3' -51.8 NC_002512.2 + 126410 0.66 0.994859
Target:  5'- gGGCGCCGUc-GACGCcg--CCUCUCc -3'
miRNA:   3'- gCUGUGGCAcuUUGCGucuaGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 76026 0.66 0.994859
Target:  5'- aGGCGCCGac-GACGCGGAcgacgccuucUCCUuCUCc -3'
miRNA:   3'- gCUGUGGCacuUUGCGUCU----------AGGA-GAG- -5'
9167 3' -51.8 NC_002512.2 + 177840 0.66 0.994783
Target:  5'- gCGAUACCGUgucgaugGAGGCcaGCAGcUCCUCg- -3'
miRNA:   3'- -GCUGUGGCA-------CUUUG--CGUCuAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 218734 0.67 0.99406
Target:  5'- aCGAC-CCGUcGAGCGCGuGUCCggccCUCg -3'
miRNA:   3'- -GCUGuGGCAcUUUGCGUcUAGGa---GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.