miRNA display CGI


Results 61 - 80 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 3' -51.8 NC_002512.2 + 186243 0.73 0.856131
Target:  5'- gGAC-CCGUGGAACaGCGGAUCCa--- -3'
miRNA:   3'- gCUGuGGCACUUUG-CGUCUAGGagag -5'
9167 3' -51.8 NC_002512.2 + 140758 0.74 0.823592
Target:  5'- aGACGCCGUGuga-GCAGGcCCUCUa -3'
miRNA:   3'- gCUGUGGCACuuugCGUCUaGGAGAg -5'
9167 3' -51.8 NC_002512.2 + 32766 0.75 0.778157
Target:  5'- gGGCGCCGaUGAucucgaaGGCGCAGGacaUCCUCUUg -3'
miRNA:   3'- gCUGUGGC-ACU-------UUGCGUCU---AGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 163331 0.77 0.681377
Target:  5'- aGACACUGUcuGGACGguGGUCCUCUUc -3'
miRNA:   3'- gCUGUGGCAc-UUUGCguCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 82484 0.8 0.519699
Target:  5'- aGACGCCGUuuGACGCcGGUCCUCUg -3'
miRNA:   3'- gCUGUGGCAcuUUGCGuCUAGGAGAg -5'
9167 3' -51.8 NC_002512.2 + 152497 0.66 0.995568
Target:  5'- aCGGCGCCacggGUGGAGCGUuccgGGGUCggggUCUCg -3'
miRNA:   3'- -GCUGUGG----CACUUUGCG----UCUAGg---AGAG- -5'
9167 3' -51.8 NC_002512.2 + 191409 0.66 0.997656
Target:  5'- gGACACCa-GGAugGCAGcAUCCgCUUu -3'
miRNA:   3'- gCUGUGGcaCUUugCGUC-UAGGaGAG- -5'
9167 3' -51.8 NC_002512.2 + 126494 0.66 0.997656
Target:  5'- uCGugGCCccGGAGCGCgAGcgCCUCg- -3'
miRNA:   3'- -GCugUGGcaCUUUGCG-UCuaGGAGag -5'
9167 3' -51.8 NC_002512.2 + 95666 0.66 0.997656
Target:  5'- -aACGCCGUGggGCuGUAGGgggCCUUcaggUCg -3'
miRNA:   3'- gcUGUGGCACuuUG-CGUCUa--GGAG----AG- -5'
9167 3' -51.8 NC_002512.2 + 36758 0.66 0.996748
Target:  5'- gGACgACCGUGAcgucgggccgGACGCAG---CUCUCc -3'
miRNA:   3'- gCUG-UGGCACU----------UUGCGUCuagGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 99450 0.66 0.996696
Target:  5'- aCGACcuggaagGCC-UGGAugGCGGucuUCCUCUUc -3'
miRNA:   3'- -GCUG-------UGGcACUUugCGUCu--AGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 102555 0.66 0.996195
Target:  5'- cCGACugCGUGuauuugagcaaGGACGCccuGGucuccAUCCUCUCc -3'
miRNA:   3'- -GCUGugGCAC-----------UUUGCG---UC-----UAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 41140 0.66 0.996195
Target:  5'- gGACACCaUGAAACuGguGAUCUugugcugCUCg -3'
miRNA:   3'- gCUGUGGcACUUUG-CguCUAGGa------GAG- -5'
9167 3' -51.8 NC_002512.2 + 8748 0.66 0.995568
Target:  5'- uCGACGaCG-GGGACGCGG-UCCUCa- -3'
miRNA:   3'- -GCUGUgGCaCUUUGCGUCuAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 188126 0.66 0.995568
Target:  5'- aGACGCUGUcGAcAUGguGuucCCUCUCa -3'
miRNA:   3'- gCUGUGGCA-CUuUGCguCua-GGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 60564 0.68 0.985981
Target:  5'- ---gGCCGUGGAACGCgAuuucuggcuguacgcGAUCCUCUUc -3'
miRNA:   3'- gcugUGGCACUUUGCG-U---------------CUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 58810 0.66 0.995568
Target:  5'- uGACgGCCGUGAAGaGCcucAUCUUCUCg -3'
miRNA:   3'- gCUG-UGGCACUUUgCGuc-UAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 15415 0.67 0.99406
Target:  5'- aGACGCCGcggugGAAGCaGUAGAcggCCUCg- -3'
miRNA:   3'- gCUGUGGCa----CUUUG-CGUCUa--GGAGag -5'
9167 3' -51.8 NC_002512.2 + 2060 0.67 0.99406
Target:  5'- gCGGCGCCagcgGGAGCGCGGAgUCCa--- -3'
miRNA:   3'- -GCUGUGGca--CUUUGCGUCU-AGGagag -5'
9167 3' -51.8 NC_002512.2 + 139543 0.67 0.992164
Target:  5'- gGACugCGUGAucacgggcagcACGguGAUCUcCUCg -3'
miRNA:   3'- gCUGugGCACUu----------UGCguCUAGGaGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.