miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 5' -49.1 NC_002512.2 + 80831 0.68 0.998416
Target:  5'- cGGcGGAGGGGCCCCGUaggCgagccUCGGGa- -3'
miRNA:   3'- -CC-UCUUUCUGGGGCAaa-Ga----AGCCUag -5'
9167 5' -49.1 NC_002512.2 + 173226 0.68 0.998416
Target:  5'- cGGAGAGAGugUCCaUggCUUC-GAUCa -3'
miRNA:   3'- -CCUCUUUCugGGGcAaaGAAGcCUAG- -5'
9167 5' -49.1 NC_002512.2 + 19293 0.68 0.998683
Target:  5'- cGGAG-AGGACCuCCGgacgaaCGGGUCg -3'
miRNA:   3'- -CCUCuUUCUGG-GGCaaagaaGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 152567 0.68 0.998683
Target:  5'- aGGAGcccGAGACCCCGUcgCcUCGcGAa- -3'
miRNA:   3'- -CCUCu--UUCUGGGGCAaaGaAGC-CUag -5'
9167 5' -49.1 NC_002512.2 + 165474 0.68 0.99891
Target:  5'- --cGGAAGAUCCCGag-UUUCGGGUg -3'
miRNA:   3'- ccuCUUUCUGGGGCaaaGAAGCCUAg -5'
9167 5' -49.1 NC_002512.2 + 75494 0.68 0.999103
Target:  5'- ---aGGAGACCCCGUcaUCgugCGGAUUa -3'
miRNA:   3'- ccucUUUCUGGGGCAa-AGaa-GCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 104855 0.68 0.999103
Target:  5'- cGGGGAGGGACCUCGcg-CagCGGGc- -3'
miRNA:   3'- -CCUCUUUCUGGGGCaaaGaaGCCUag -5'
9167 5' -49.1 NC_002512.2 + 187283 0.67 0.999266
Target:  5'- --cGAAGuGcCCCCGgg-CUUCGGGUCc -3'
miRNA:   3'- ccuCUUU-CuGGGGCaaaGAAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 226801 0.67 0.999403
Target:  5'- cGGAG-AAGAUCUCGUcggCggaCGGGUCg -3'
miRNA:   3'- -CCUCuUUCUGGGGCAaa-Gaa-GCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 121420 0.67 0.999403
Target:  5'- uGGAGGGAGACgCCCGcggagUCggcccCGGAg- -3'
miRNA:   3'- -CCUCUUUCUG-GGGCaa---AGaa---GCCUag -5'
9167 5' -49.1 NC_002512.2 + 102640 0.67 0.999403
Target:  5'- cGGAGcAGGACCCCGaugUCguagacCGGGg- -3'
miRNA:   3'- -CCUCuUUCUGGGGCaa-AGaa----GCCUag -5'
9167 5' -49.1 NC_002512.2 + 132002 0.67 0.999517
Target:  5'- gGGAGAGgggGGAUCUCGcgUCggcgggCGGGUCc -3'
miRNA:   3'- -CCUCUU---UCUGGGGCaaAGaa----GCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 145198 0.67 0.999517
Target:  5'- cGGAGuucGACCCCGgg-CUgCGGGa- -3'
miRNA:   3'- -CCUCuuuCUGGGGCaaaGAaGCCUag -5'
9167 5' -49.1 NC_002512.2 + 155053 0.67 0.999517
Target:  5'- cGGGGAGGGuCUCCGUUcgCgcgCgGGGUCg -3'
miRNA:   3'- -CCUCUUUCuGGGGCAAa-Gaa-G-CCUAG- -5'
9167 5' -49.1 NC_002512.2 + 78350 0.67 0.999612
Target:  5'- cGGGAcGGGACCCC---UUUUCGGGUUu -3'
miRNA:   3'- cCUCU-UUCUGGGGcaaAGAAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 76930 0.67 0.999612
Target:  5'- aGAaGAGGACCCCGcucg--CGGAUCc -3'
miRNA:   3'- cCUcUUUCUGGGGCaaagaaGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 167560 0.67 0.99969
Target:  5'- -cAGggGGugCCCGUcggcUUCUUCccGGUCa -3'
miRNA:   3'- ccUCuuUCugGGGCA----AAGAAGc-CUAG- -5'
9167 5' -49.1 NC_002512.2 + 153004 0.67 0.99969
Target:  5'- gGGAGc-GGuCCCCGg----UCGGGUCg -3'
miRNA:   3'- -CCUCuuUCuGGGGCaaagaAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 153029 0.67 0.99969
Target:  5'- gGGAGc-GGuCCCCGg----UCGGGUCg -3'
miRNA:   3'- -CCUCuuUCuGGGGCaaagaAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 153054 0.67 0.99969
Target:  5'- gGGAGc-GGuCCCCGg----UCGGGUCg -3'
miRNA:   3'- -CCUCuuUCuGGGGCaaagaAGCCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.