miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 5' -49.1 NC_002512.2 + 103649 0.66 0.999848
Target:  5'- cGAGAcGGACCCCGagacgUCuGGUCg -3'
miRNA:   3'- cCUCUuUCUGGGGCaaagaAGcCUAG- -5'
9167 5' -49.1 NC_002512.2 + 104855 0.68 0.999103
Target:  5'- cGGGGAGGGACCUCGcg-CagCGGGc- -3'
miRNA:   3'- -CCUCUUUCUGGGGCaaaGaaGCCUag -5'
9167 5' -49.1 NC_002512.2 + 105507 0.65 0.999904
Target:  5'- gGGAGGAcggggggcucuggcuGGACCCCGgcgcccggGGGUCg -3'
miRNA:   3'- -CCUCUU---------------UCUGGGGCaaagaag-CCUAG- -5'
9167 5' -49.1 NC_002512.2 + 109008 0.69 0.996852
Target:  5'- aGGAGAGGGACCUCGaggggCgggCGGGg- -3'
miRNA:   3'- -CCUCUUUCUGGGGCaaa--Gaa-GCCUag -5'
9167 5' -49.1 NC_002512.2 + 121420 0.67 0.999403
Target:  5'- uGGAGGGAGACgCCCGcggagUCggcccCGGAg- -3'
miRNA:   3'- -CCUCUUUCUG-GGGCaa---AGaa---GCCUag -5'
9167 5' -49.1 NC_002512.2 + 122791 0.66 0.999848
Target:  5'- cGAGGGcgccGGGCCCUGg--CggCGGGUCc -3'
miRNA:   3'- cCUCUU----UCUGGGGCaaaGaaGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 123566 0.66 0.999806
Target:  5'- cGGGGAGAG-CCgCCGaaggcgCUgCGGGUCu -3'
miRNA:   3'- -CCUCUUUCuGG-GGCaaa---GAaGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 127854 0.69 0.99733
Target:  5'- cGGAGcgGGAUCCCGUgggCgcgCGGGa- -3'
miRNA:   3'- -CCUCuuUCUGGGGCAaa-Gaa-GCCUag -5'
9167 5' -49.1 NC_002512.2 + 130232 0.71 0.98357
Target:  5'- cGGGGAAccucuGGGCCCCGgcgugCUUggugaGGAUCa -3'
miRNA:   3'- -CCUCUU-----UCUGGGGCaaa--GAAg----CCUAG- -5'
9167 5' -49.1 NC_002512.2 + 130500 0.73 0.962361
Target:  5'- gGGAGuccGGACCCCGacgCUggcggagagcUCGGGUCg -3'
miRNA:   3'- -CCUCuu-UCUGGGGCaaaGA----------AGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 132002 0.67 0.999517
Target:  5'- gGGAGAGgggGGAUCUCGcgUCggcgggCGGGUCc -3'
miRNA:   3'- -CCUCUU---UCUGGGGCaaAGaa----GCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 134729 0.66 0.999806
Target:  5'- cGGGGGAAGGCUCCGguccUCgacccgcCGGggCg -3'
miRNA:   3'- -CCUCUUUCUGGGGCaa--AGaa-----GCCuaG- -5'
9167 5' -49.1 NC_002512.2 + 138122 0.73 0.968876
Target:  5'- uGGGGGugaaggcgGAGAUCCCGgaggcgUUCUUCGGGc- -3'
miRNA:   3'- -CCUCU--------UUCUGGGGCa-----AAGAAGCCUag -5'
9167 5' -49.1 NC_002512.2 + 142187 0.77 0.853464
Target:  5'- gGGAGAAGGAUCCgGggUCgugUCGGcgCg -3'
miRNA:   3'- -CCUCUUUCUGGGgCaaAGa--AGCCuaG- -5'
9167 5' -49.1 NC_002512.2 + 145198 0.67 0.999517
Target:  5'- cGGAGuucGACCCCGgg-CUgCGGGa- -3'
miRNA:   3'- -CCUCuuuCUGGGGCaaaGAaGCCUag -5'
9167 5' -49.1 NC_002512.2 + 150153 0.69 0.995684
Target:  5'- -aAGAAAGAaaCCCGUUUCUuuUUGGGUUa -3'
miRNA:   3'- ccUCUUUCUg-GGGCAAAGA--AGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 151812 0.73 0.954954
Target:  5'- gGGAGAGAGAagcgCCCGacgUUCcUCGGAUg -3'
miRNA:   3'- -CCUCUUUCUg---GGGCa--AAGaAGCCUAg -5'
9167 5' -49.1 NC_002512.2 + 152202 0.69 0.995684
Target:  5'- cGGAGAGuGGACCCCGgucCUggcCGGuUCu -3'
miRNA:   3'- -CCUCUU-UCUGGGGCaaaGAa--GCCuAG- -5'
9167 5' -49.1 NC_002512.2 + 152567 0.68 0.998683
Target:  5'- aGGAGcccGAGACCCCGUcgCcUCGcGAa- -3'
miRNA:   3'- -CCUCu--UUCUGGGGCAaaGaAGC-CUag -5'
9167 5' -49.1 NC_002512.2 + 152954 0.67 0.99969
Target:  5'- gGGAGc-GGuCCCCGg----UCGGGUCg -3'
miRNA:   3'- -CCUCuuUCuGGGGCaaagaAGCCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.