miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 5' -49.1 NC_002512.2 + 142187 0.77 0.853464
Target:  5'- gGGAGAAGGAUCCgGggUCgugUCGGcgCg -3'
miRNA:   3'- -CCUCUUUCUGGGgCaaAGa--AGCCuaG- -5'
9167 5' -49.1 NC_002512.2 + 212631 0.71 0.98539
Target:  5'- cGGAcGAGGGGCCCCGUUaugUCgUCGaGAg- -3'
miRNA:   3'- -CCU-CUUUCUGGGGCAA---AGaAGC-CUag -5'
9167 5' -49.1 NC_002512.2 + 92365 0.69 0.99733
Target:  5'- uGGAGAAGGugcuguCCCCGUUcCUgacgUCGG-UCc -3'
miRNA:   3'- -CCUCUUUCu-----GGGGCAAaGA----AGCCuAG- -5'
9167 5' -49.1 NC_002512.2 + 152202 0.69 0.995684
Target:  5'- cGGAGAGuGGACCCCGgucCUggcCGGuUCu -3'
miRNA:   3'- -CCUCUU-UCUGGGGCaaaGAa--GCCuAG- -5'
9167 5' -49.1 NC_002512.2 + 130232 0.71 0.98357
Target:  5'- cGGGGAAccucuGGGCCCCGgcgugCUUggugaGGAUCa -3'
miRNA:   3'- -CCUCUU-----UCUGGGGCaaa--GAAg----CCUAG- -5'
9167 5' -49.1 NC_002512.2 + 157042 0.69 0.996306
Target:  5'- cGGAGcGAGGACCCCGgcaaggCGGGc- -3'
miRNA:   3'- -CCUC-UUUCUGGGGCaaagaaGCCUag -5'
9167 5' -49.1 NC_002512.2 + 55280 1.13 0.013412
Target:  5'- gGGAGAAAGACCCCGUUUCUUCGGAUCu -3'
miRNA:   3'- -CCUCUUUCUGGGGCAAAGAAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 211858 0.69 0.996852
Target:  5'- aGGAGAAGGACCUCagcaUCgUCGGcgCc -3'
miRNA:   3'- -CCUCUUUCUGGGGcaa-AGaAGCCuaG- -5'
9167 5' -49.1 NC_002512.2 + 19293 0.68 0.998683
Target:  5'- cGGAG-AGGACCuCCGgacgaaCGGGUCg -3'
miRNA:   3'- -CCUCuUUCUGG-GGCaaagaaGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 88067 0.74 0.937321
Target:  5'- cGGGGAacGAGACCaucuCCGUcgagUUUCGGAUCg -3'
miRNA:   3'- -CCUCU--UUCUGG----GGCAaa--GAAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 22364 0.71 0.98357
Target:  5'- gGGAGGAcgcGGCCCCGUccucgUCgucggucgCGGAUCc -3'
miRNA:   3'- -CCUCUUu--CUGGGGCAa----AGaa------GCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 27668 0.71 0.988563
Target:  5'- uGGAGAcgaACCCCGUaUCccgCGGGUCc -3'
miRNA:   3'- -CCUCUuucUGGGGCAaAGaa-GCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 33748 0.69 0.996852
Target:  5'- cGAGGAGcGGCCCUGgaagucCUUCaGGAUCg -3'
miRNA:   3'- cCUCUUU-CUGGGGCaaa---GAAG-CCUAG- -5'
9167 5' -49.1 NC_002512.2 + 173226 0.68 0.998416
Target:  5'- cGGAGAGAGugUCCaUggCUUC-GAUCa -3'
miRNA:   3'- -CCUCUUUCugGGGcAaaGAAGcCUAG- -5'
9167 5' -49.1 NC_002512.2 + 87060 0.66 0.999806
Target:  5'- uGGAGAAacAGaACCUuaCGgcgUUCcUCGGGUCg -3'
miRNA:   3'- -CCUCUU--UC-UGGG--GCa--AAGaAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 104855 0.68 0.999103
Target:  5'- cGGGGAGGGACCUCGcg-CagCGGGc- -3'
miRNA:   3'- -CCUCUUUCUGGGGCaaaGaaGCCUag -5'
9167 5' -49.1 NC_002512.2 + 226801 0.67 0.999403
Target:  5'- cGGAG-AAGAUCUCGUcggCggaCGGGUCg -3'
miRNA:   3'- -CCUCuUUCUGGGGCAaa-Gaa-GCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 122791 0.66 0.999848
Target:  5'- cGAGGGcgccGGGCCCUGg--CggCGGGUCc -3'
miRNA:   3'- cCUCUU----UCUGGGGCaaaGaaGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 103649 0.66 0.999848
Target:  5'- cGAGAcGGACCCCGagacgUCuGGUCg -3'
miRNA:   3'- cCUCUuUCUGGGGCaaagaAGcCUAG- -5'
9167 5' -49.1 NC_002512.2 + 79877 0.66 0.999848
Target:  5'- aGGAGGAAGagaGCCCCGgcg---UGGGUUc -3'
miRNA:   3'- -CCUCUUUC---UGGGGCaaagaaGCCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.