miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 5' -49.1 NC_002512.2 + 152979 0.67 0.99969
Target:  5'- gGGAGc-GGuCCCCGg----UCGGGUCg -3'
miRNA:   3'- -CCUCuuUCuGGGGCaaagaAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 153004 0.67 0.99969
Target:  5'- gGGAGc-GGuCCCCGg----UCGGGUCg -3'
miRNA:   3'- -CCUCuuUCuGGGGCaaagaAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 153029 0.67 0.99969
Target:  5'- gGGAGc-GGuCCCCGg----UCGGGUCg -3'
miRNA:   3'- -CCUCuuUCuGGGGCaaagaAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 153054 0.67 0.99969
Target:  5'- gGGAGc-GGuCCCCGg----UCGGGUCg -3'
miRNA:   3'- -CCUCuuUCuGGGGCaaagaAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 155053 0.67 0.999517
Target:  5'- cGGGGAGGGuCUCCGUUcgCgcgCgGGGUCg -3'
miRNA:   3'- -CCUCUUUCuGGGGCAAa-Gaa-G-CCUAG- -5'
9167 5' -49.1 NC_002512.2 + 157042 0.69 0.996306
Target:  5'- cGGAGcGAGGACCCCGgcaaggCGGGc- -3'
miRNA:   3'- -CCUC-UUUCUGGGGCaaagaaGCCUag -5'
9167 5' -49.1 NC_002512.2 + 165474 0.68 0.99891
Target:  5'- --cGGAAGAUCCCGag-UUUCGGGUg -3'
miRNA:   3'- ccuCUUUCUGGGGCaaaGAAGCCUAg -5'
9167 5' -49.1 NC_002512.2 + 167560 0.67 0.99969
Target:  5'- -cAGggGGugCCCGUcggcUUCUUCccGGUCa -3'
miRNA:   3'- ccUCuuUCugGGGCA----AAGAAGc-CUAG- -5'
9167 5' -49.1 NC_002512.2 + 173226 0.68 0.998416
Target:  5'- cGGAGAGAGugUCCaUggCUUC-GAUCa -3'
miRNA:   3'- -CCUCUUUCugGGGcAaaGAAGcCUAG- -5'
9167 5' -49.1 NC_002512.2 + 187283 0.67 0.999266
Target:  5'- --cGAAGuGcCCCCGgg-CUUCGGGUCc -3'
miRNA:   3'- ccuCUUU-CuGGGGCaaaGAAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 192202 0.66 0.999754
Target:  5'- uGGGGAGGACCCgGaccCUUCGGccucuUCg -3'
miRNA:   3'- cCUCUUUCUGGGgCaaaGAAGCCu----AG- -5'
9167 5' -49.1 NC_002512.2 + 211858 0.69 0.996852
Target:  5'- aGGAGAAGGACCUCagcaUCgUCGGcgCc -3'
miRNA:   3'- -CCUCUUUCUGGGGcaa-AGaAGCCuaG- -5'
9167 5' -49.1 NC_002512.2 + 212631 0.71 0.98539
Target:  5'- cGGAcGAGGGGCCCCGUUaugUCgUCGaGAg- -3'
miRNA:   3'- -CCU-CUUUCUGGGGCAA---AGaAGC-CUag -5'
9167 5' -49.1 NC_002512.2 + 226801 0.67 0.999403
Target:  5'- cGGAG-AAGAUCUCGUcggCggaCGGGUCg -3'
miRNA:   3'- -CCUCuUUCUGGGGCAaa-Gaa-GCCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.