miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 5' -49.1 NC_002512.2 + 187283 0.67 0.999266
Target:  5'- --cGAAGuGcCCCCGgg-CUUCGGGUCc -3'
miRNA:   3'- ccuCUUU-CuGGGGCaaaGAAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 121420 0.67 0.999403
Target:  5'- uGGAGGGAGACgCCCGcggagUCggcccCGGAg- -3'
miRNA:   3'- -CCUCUUUCUG-GGGCaa---AGaa---GCCUag -5'
9167 5' -49.1 NC_002512.2 + 102640 0.67 0.999403
Target:  5'- cGGAGcAGGACCCCGaugUCguagacCGGGg- -3'
miRNA:   3'- -CCUCuUUCUGGGGCaa-AGaa----GCCUag -5'
9167 5' -49.1 NC_002512.2 + 155053 0.67 0.999517
Target:  5'- cGGGGAGGGuCUCCGUUcgCgcgCgGGGUCg -3'
miRNA:   3'- -CCUCUUUCuGGGGCAAa-Gaa-G-CCUAG- -5'
9167 5' -49.1 NC_002512.2 + 145198 0.67 0.999517
Target:  5'- cGGAGuucGACCCCGgg-CUgCGGGa- -3'
miRNA:   3'- -CCUCuuuCUGGGGCaaaGAaGCCUag -5'
9167 5' -49.1 NC_002512.2 + 76930 0.67 0.999612
Target:  5'- aGAaGAGGACCCCGcucg--CGGAUCc -3'
miRNA:   3'- cCUcUUUCUGGGGCaaagaaGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 152954 0.67 0.99969
Target:  5'- gGGAGc-GGuCCCCGg----UCGGGUCg -3'
miRNA:   3'- -CCUCuuUCuGGGGCaaagaAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 152979 0.67 0.99969
Target:  5'- gGGAGc-GGuCCCCGg----UCGGGUCg -3'
miRNA:   3'- -CCUCuuUCuGGGGCaaagaAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 153004 0.67 0.99969
Target:  5'- gGGAGc-GGuCCCCGg----UCGGGUCg -3'
miRNA:   3'- -CCUCuuUCuGGGGCaaagaAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 153029 0.67 0.99969
Target:  5'- gGGAGc-GGuCCCCGg----UCGGGUCg -3'
miRNA:   3'- -CCUCuuUCuGGGGCaaagaAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 153054 0.67 0.99969
Target:  5'- gGGAGc-GGuCCCCGg----UCGGGUCg -3'
miRNA:   3'- -CCUCuuUCuGGGGCaaagaAGCCUAG- -5'
9167 5' -49.1 NC_002512.2 + 167560 0.67 0.99969
Target:  5'- -cAGggGGugCCCGUcggcUUCUUCccGGUCa -3'
miRNA:   3'- ccUCuuUCugGGGCA----AAGAAGc-CUAG- -5'
9167 5' -49.1 NC_002512.2 + 192202 0.66 0.999754
Target:  5'- uGGGGAGGACCCgGaccCUUCGGccucuUCg -3'
miRNA:   3'- cCUCUUUCUGGGgCaaaGAAGCCu----AG- -5'
9167 5' -49.1 NC_002512.2 + 123566 0.66 0.999806
Target:  5'- cGGGGAGAG-CCgCCGaaggcgCUgCGGGUCu -3'
miRNA:   3'- -CCUCUUUCuGG-GGCaaa---GAaGCCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.