miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9168 3' -49.6 NC_002512.2 + 220318 0.67 0.998849
Target:  5'- gGCcgGGGGCcgG-GcUCcgGGggGCCGg -3'
miRNA:   3'- -UGuaCCCUGuaCaCaAGa-CCuuUGGC- -5'
9168 3' -49.6 NC_002512.2 + 156524 0.67 0.998001
Target:  5'- ---aGGGcCAUGUGUUCcUGcGAcGCCGg -3'
miRNA:   3'- uguaCCCuGUACACAAG-AC-CUuUGGC- -5'
9168 3' -49.6 NC_002512.2 + 28794 0.68 0.99758
Target:  5'- cUAUGGGGCGUGUGUuccuaaaUCUguauucacucgaGGAGACgGu -3'
miRNA:   3'- uGUACCCUGUACACA-------AGA------------CCUUUGgC- -5'
9168 3' -49.6 NC_002512.2 + 148912 0.68 0.996681
Target:  5'- -gAUGGGGCuuuuagcgGUGga-UGGGGACCGg -3'
miRNA:   3'- ugUACCCUGua------CACaagACCUUUGGC- -5'
9168 3' -49.6 NC_002512.2 + 189634 0.69 0.99388
Target:  5'- uCAUGGGcugaggcaACAgauaccaGUGUUCUGGAAAUCu -3'
miRNA:   3'- uGUACCC--------UGUa------CACAAGACCUUUGGc -5'
9168 3' -49.6 NC_002512.2 + 161195 0.69 0.991894
Target:  5'- ---gGGGACG-GUGUgcCUGGAGGCCc -3'
miRNA:   3'- uguaCCCUGUaCACAa-GACCUUUGGc -5'
9168 3' -49.6 NC_002512.2 + 101910 0.7 0.986416
Target:  5'- gACG-GGGGCGgcGUGUUCUccaugcGGGGACCGa -3'
miRNA:   3'- -UGUaCCCUGUa-CACAAGA------CCUUUGGC- -5'
9168 3' -49.6 NC_002512.2 + 219565 0.7 0.984129
Target:  5'- cGCcgGGGACGUGUgcgacggcuccuacGUcCUGGugGCCGa -3'
miRNA:   3'- -UGuaCCCUGUACA--------------CAaGACCuuUGGC- -5'
9168 3' -49.6 NC_002512.2 + 210833 0.7 0.982783
Target:  5'- -gGUGGGACAcGgccgUCUGGggGCUGc -3'
miRNA:   3'- ugUACCCUGUaCaca-AGACCuuUGGC- -5'
9168 3' -49.6 NC_002512.2 + 59375 0.71 0.980712
Target:  5'- aACGUGGcggagaugcgcGACAUGUGcguggcgCUGGAGAUCGa -3'
miRNA:   3'- -UGUACC-----------CUGUACACaa-----GACCUUUGGC- -5'
9168 3' -49.6 NC_002512.2 + 227070 0.71 0.973386
Target:  5'- cCGUGGGAUAUGUcuaCUGGAGACa- -3'
miRNA:   3'- uGUACCCUGUACAcaaGACCUUUGgc -5'
9168 3' -49.6 NC_002512.2 + 169347 0.73 0.948874
Target:  5'- gACGUGGGaggggacugGCAUGUGgg-UGGGAGCCa -3'
miRNA:   3'- -UGUACCC---------UGUACACaagACCUUUGGc -5'
9168 3' -49.6 NC_002512.2 + 169449 0.73 0.948874
Target:  5'- gACGUGGGaggaaccugGCAUGUGgg-UGGGAACCa -3'
miRNA:   3'- -UGUACCC---------UGUACACaagACCUUUGGc -5'
9168 3' -49.6 NC_002512.2 + 54143 0.95 0.123146
Target:  5'- cACAUGGGACAUGUGUUCUGaAAACCGc -3'
miRNA:   3'- -UGUACCCUGUACACAAGACcUUUGGC- -5'
9168 3' -49.6 NC_002512.2 + 54531 1.09 0.018928
Target:  5'- cACAUGGGACAUGUGUUCUGGAAACCGc -3'
miRNA:   3'- -UGUACCCUGUACACAAGACCUUUGGC- -5'
9168 3' -49.6 NC_002512.2 + 54337 1.09 0.018928
Target:  5'- cACAUGGGACAUGUGUUCUGGAAACCGc -3'
miRNA:   3'- -UGUACCCUGUACACAAGACCUUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.