miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9169 3' -50.3 NC_002512.2 + 183507 0.66 0.99868
Target:  5'- --gCCGCGAgggGGAGGCCgUCCUCGc- -3'
miRNA:   3'- agaGGUGUUa--UUUCUGGgGGGAGUuu -5'
9169 3' -50.3 NC_002512.2 + 813 0.66 0.998437
Target:  5'- cCUCCACcucuguuuCCCCCCUCu-- -3'
miRNA:   3'- aGAGGUGuuauuucuGGGGGGAGuuu -5'
9169 3' -50.3 NC_002512.2 + 194558 0.66 0.998091
Target:  5'- --aCCGCcccggGAAGGCCgugCCCCUCAAGg -3'
miRNA:   3'- agaGGUGuua--UUUCUGG---GGGGAGUUU- -5'
9169 3' -50.3 NC_002512.2 + 182149 0.66 0.998091
Target:  5'- gCUCCACGAUcuguuccGAG-CCCUCCUCc-- -3'
miRNA:   3'- aGAGGUGUUAu------UUCuGGGGGGAGuuu -5'
9169 3' -50.3 NC_002512.2 + 212295 0.66 0.997722
Target:  5'- -aUCCGCG----AGAUCCCCgUCAAGa -3'
miRNA:   3'- agAGGUGUuauuUCUGGGGGgAGUUU- -5'
9169 3' -50.3 NC_002512.2 + 5480 0.66 0.997295
Target:  5'- aUCUUCcuGCAGaGGAGAUCCCUUUCGGAa -3'
miRNA:   3'- -AGAGG--UGUUaUUUCUGGGGGGAGUUU- -5'
9169 3' -50.3 NC_002512.2 + 76922 0.66 0.997295
Target:  5'- aCUUUAUAAgaaGAGGACCCCgCUCGc- -3'
miRNA:   3'- aGAGGUGUUa--UUUCUGGGGgGAGUuu -5'
9169 3' -50.3 NC_002512.2 + 142527 0.66 0.997295
Target:  5'- aCUCCACGGUAcAGuuCgCCCCgUCGAc -3'
miRNA:   3'- aGAGGUGUUAUuUCu-G-GGGGgAGUUu -5'
9169 3' -50.3 NC_002512.2 + 155417 0.67 0.995602
Target:  5'- gCUCUGCGAccgGGAGugCCCCgUCGu- -3'
miRNA:   3'- aGAGGUGUUa--UUUCugGGGGgAGUuu -5'
9169 3' -50.3 NC_002512.2 + 69650 0.67 0.994874
Target:  5'- cUCUCacUACAA-AAAGACCUUCCUCAu- -3'
miRNA:   3'- -AGAG--GUGUUaUUUCUGGGGGGAGUuu -5'
9169 3' -50.3 NC_002512.2 + 154379 0.68 0.993127
Target:  5'- cUUCCGCGGcgAAAGucccGCCCCCgUCGGAg -3'
miRNA:   3'- aGAGGUGUUa-UUUC----UGGGGGgAGUUU- -5'
9169 3' -50.3 NC_002512.2 + 87576 0.68 0.992828
Target:  5'- cUCUCCGCAGacGgcgacggacgcgucGGAUCCCCCgUCGAc -3'
miRNA:   3'- -AGAGGUGUUauU--------------UCUGGGGGG-AGUUu -5'
9169 3' -50.3 NC_002512.2 + 96052 0.68 0.992091
Target:  5'- cCUCCGg---AGAGGCCUCCCUCc-- -3'
miRNA:   3'- aGAGGUguuaUUUCUGGGGGGAGuuu -5'
9169 3' -50.3 NC_002512.2 + 55268 0.68 0.990934
Target:  5'- cUCUCCGCuccugggagAAAGACCCCguuuCUUCGGAu -3'
miRNA:   3'- -AGAGGUGuua------UUUCUGGGG----GGAGUUU- -5'
9169 3' -50.3 NC_002512.2 + 209260 0.68 0.988223
Target:  5'- gCUCgGCGAaccGGACCUCCUUCGAGg -3'
miRNA:   3'- aGAGgUGUUauuUCUGGGGGGAGUUU- -5'
9169 3' -50.3 NC_002512.2 + 82329 0.69 0.986651
Target:  5'- cUCUCCGgAGaGGAGACCCaCCgCUUAAGc -3'
miRNA:   3'- -AGAGGUgUUaUUUCUGGG-GG-GAGUUU- -5'
9169 3' -50.3 NC_002512.2 + 189090 0.69 0.986651
Target:  5'- gUCUCCGCGAcguccGAUCCUCCUCu-- -3'
miRNA:   3'- -AGAGGUGUUauuu-CUGGGGGGAGuuu -5'
9169 3' -50.3 NC_002512.2 + 77187 0.69 0.98303
Target:  5'- uUCUUCGCGGacgaucgaGGAGGCCCCCCUg--- -3'
miRNA:   3'- -AGAGGUGUUa-------UUUCUGGGGGGAguuu -5'
9169 3' -50.3 NC_002512.2 + 60219 0.71 0.948988
Target:  5'- cCUCCuuCAAU--GGACCCCCCaaUCGGAg -3'
miRNA:   3'- aGAGGu-GUUAuuUCUGGGGGG--AGUUU- -5'
9169 3' -50.3 NC_002512.2 + 120058 0.72 0.939807
Target:  5'- cCUgCCGCcccaGGGGACUCCCCUCAGAc -3'
miRNA:   3'- aGA-GGUGuua-UUUCUGGGGGGAGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.