miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9170 3' -53 NC_002512.2 + 199521 0.66 0.99402
Target:  5'- aGGUCGucGGGCGAc-AGGAaucgUUCGGGGAa -3'
miRNA:   3'- -CUAGC--UCUGCUauUCCU----AGGCCCCUg -5'
9170 3' -53 NC_002512.2 + 227690 0.66 0.993129
Target:  5'- cGAcCGAGACGAcGAcGGcggCGGGGGCg -3'
miRNA:   3'- -CUaGCUCUGCUaUU-CCuagGCCCCUG- -5'
9170 3' -53 NC_002512.2 + 228944 0.66 0.993129
Target:  5'- aGggCGAGGCGAggaGAGGAgaggggCGGaGGGCg -3'
miRNA:   3'- -CuaGCUCUGCUa--UUCCUag----GCC-CCUG- -5'
9170 3' -53 NC_002512.2 + 95789 0.66 0.992134
Target:  5'- --cCGAG-CGGU-AGGcgCCGGGGcGCg -3'
miRNA:   3'- cuaGCUCuGCUAuUCCuaGGCCCC-UG- -5'
9170 3' -53 NC_002512.2 + 150191 0.66 0.992134
Target:  5'- --cUGGGGgGAgAGGGAUCCGGGaACc -3'
miRNA:   3'- cuaGCUCUgCUaUUCCUAGGCCCcUG- -5'
9170 3' -53 NC_002512.2 + 76107 0.66 0.992134
Target:  5'- --cUGAGGCGG--GGGcgCCGGGGu- -3'
miRNA:   3'- cuaGCUCUGCUauUCCuaGGCCCCug -5'
9170 3' -53 NC_002512.2 + 37769 0.66 0.991029
Target:  5'- ---gGAGACGcgGAGGGUCCucugccGGGAa -3'
miRNA:   3'- cuagCUCUGCuaUUCCUAGGc-----CCCUg -5'
9170 3' -53 NC_002512.2 + 129253 0.66 0.991029
Target:  5'- uGcgCGGGGCGAUccAGGAcuaGGGGACc -3'
miRNA:   3'- -CuaGCUCUGCUAu-UCCUaggCCCCUG- -5'
9170 3' -53 NC_002512.2 + 75675 0.66 0.991029
Target:  5'- cGcgCGAgagacGACGAUGGGGggUgGGGGAa -3'
miRNA:   3'- -CuaGCU-----CUGCUAUUCCuaGgCCCCUg -5'
9170 3' -53 NC_002512.2 + 195675 0.66 0.991029
Target:  5'- --cCGAGACGGaGAGGuacguguuggacGUCC-GGGACg -3'
miRNA:   3'- cuaGCUCUGCUaUUCC------------UAGGcCCCUG- -5'
9170 3' -53 NC_002512.2 + 110965 0.66 0.991029
Target:  5'- cGGUCGAuGACGAgcAGccgCCGGuGGACc -3'
miRNA:   3'- -CUAGCU-CUGCUauUCcuaGGCC-CCUG- -5'
9170 3' -53 NC_002512.2 + 111706 0.66 0.989804
Target:  5'- gGGUCGcGGAUGAcGAcGGAgucUCCGGcGGGCa -3'
miRNA:   3'- -CUAGC-UCUGCUaUU-CCU---AGGCC-CCUG- -5'
9170 3' -53 NC_002512.2 + 157063 0.66 0.989804
Target:  5'- --gCG-GGCGucccGGGGUCCGGGGuCg -3'
miRNA:   3'- cuaGCuCUGCuau-UCCUAGGCCCCuG- -5'
9170 3' -53 NC_002512.2 + 149366 0.66 0.989804
Target:  5'- cGGggGAGAgGAcGAGGG-CgCGGGGACg -3'
miRNA:   3'- -CUagCUCUgCUaUUCCUaG-GCCCCUG- -5'
9170 3' -53 NC_002512.2 + 201738 0.66 0.989675
Target:  5'- ---gGAGACGAcggcUGGGGcgCCgaucccgGGGGACg -3'
miRNA:   3'- cuagCUCUGCU----AUUCCuaGG-------CCCCUG- -5'
9170 3' -53 NC_002512.2 + 94470 0.66 0.988453
Target:  5'- --gCGAccGGCGG--AGGAgauccagCCGGGGACg -3'
miRNA:   3'- cuaGCU--CUGCUauUCCUa------GGCCCCUG- -5'
9170 3' -53 NC_002512.2 + 204626 0.67 0.986966
Target:  5'- --aCGAcGACGAaGGGGA--CGGGGACc -3'
miRNA:   3'- cuaGCU-CUGCUaUUCCUagGCCCCUG- -5'
9170 3' -53 NC_002512.2 + 97790 0.67 0.986966
Target:  5'- --cCGAGACGGacGAGaccgcucgcuGAacUCCGGGGACg -3'
miRNA:   3'- cuaGCUCUGCUa-UUC----------CU--AGGCCCCUG- -5'
9170 3' -53 NC_002512.2 + 206 0.67 0.986966
Target:  5'- --cCG-GGCGGaGAGGGagCGGGGACc -3'
miRNA:   3'- cuaGCuCUGCUaUUCCUagGCCCCUG- -5'
9170 3' -53 NC_002512.2 + 227946 0.67 0.986966
Target:  5'- --aCGAGGCGG--GGGAgcgCgGGGGAg -3'
miRNA:   3'- cuaGCUCUGCUauUCCUa--GgCCCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.