miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9171 5' -60.4 NC_002512.2 + 217210 0.66 0.834677
Target:  5'- aUCCUCGCCAgccggCCCGUGCcgauguGGUAGu- -3'
miRNA:   3'- -AGGGGCGGUaga--GGGCACG------CCGUUga -5'
9171 5' -60.4 NC_002512.2 + 189336 0.66 0.826758
Target:  5'- -gCCCGCgCGUCUCgCGcgGUGGCGuCUg -3'
miRNA:   3'- agGGGCG-GUAGAGgGCa-CGCCGUuGA- -5'
9171 5' -60.4 NC_002512.2 + 94110 0.66 0.826758
Target:  5'- cUCCuCCGCCAgcCUCUCGU-CGGCcagGACg -3'
miRNA:   3'- -AGG-GGCGGUa-GAGGGCAcGCCG---UUGa -5'
9171 5' -60.4 NC_002512.2 + 109268 0.66 0.81868
Target:  5'- gUCCCGCCGcCUCCCGcucucacCGGCGcccGCUc -3'
miRNA:   3'- aGGGGCGGUaGAGGGCac-----GCCGU---UGA- -5'
9171 5' -60.4 NC_002512.2 + 91874 0.66 0.81868
Target:  5'- --gCCGCCGUCcggCgCGgGCGGCGGCg -3'
miRNA:   3'- aggGGCGGUAGa--GgGCaCGCCGUUGa -5'
9171 5' -60.4 NC_002512.2 + 215746 0.66 0.817863
Target:  5'- gUCCCGCUGcccaagggcuguuUCUCCa--GCGGCAGCg -3'
miRNA:   3'- aGGGGCGGU-------------AGAGGgcaCGCCGUUGa -5'
9171 5' -60.4 NC_002512.2 + 146081 0.66 0.817046
Target:  5'- gCCgCCGCCggCgcgCCCGacgcgguccucgGCGGCGGCg -3'
miRNA:   3'- aGG-GGCGGuaGa--GGGCa-----------CGCCGUUGa -5'
9171 5' -60.4 NC_002512.2 + 225042 0.66 0.809618
Target:  5'- aCCCCGCgAUggccgcgCUCCuCGgcgGCGcGCAACa -3'
miRNA:   3'- aGGGGCGgUA-------GAGG-GCa--CGC-CGUUGa -5'
9171 5' -60.4 NC_002512.2 + 126648 0.66 0.802074
Target:  5'- cCCUCGCCG-CggCCGUcgacggGCGGCGACg -3'
miRNA:   3'- aGGGGCGGUaGagGGCA------CGCCGUUGa -5'
9171 5' -60.4 NC_002512.2 + 185611 0.66 0.802074
Target:  5'- cUCCUgGCCAacggCgUCCCGUGuCGGUgcAGCUg -3'
miRNA:   3'- -AGGGgCGGUa---G-AGGGCAC-GCCG--UUGA- -5'
9171 5' -60.4 NC_002512.2 + 145017 0.66 0.802074
Target:  5'- uUCgCCCGCUAcg-CCCGgGCGcGCAACg -3'
miRNA:   3'- -AG-GGGCGGUagaGGGCaCGC-CGUUGa -5'
9171 5' -60.4 NC_002512.2 + 187308 0.66 0.802074
Target:  5'- gCCCCGCCG-CUCgCCucGCGGCGc-- -3'
miRNA:   3'- aGGGGCGGUaGAG-GGcaCGCCGUuga -5'
9171 5' -60.4 NC_002512.2 + 154769 0.66 0.793561
Target:  5'- -gCCCGUC-UC-CCCGUguccgccagGCGGCGACg -3'
miRNA:   3'- agGGGCGGuAGaGGGCA---------CGCCGUUGa -5'
9171 5' -60.4 NC_002512.2 + 119325 0.66 0.793561
Target:  5'- -aCCCGgCAggacCUCCCGcGCGGgGGCg -3'
miRNA:   3'- agGGGCgGUa---GAGGGCaCGCCgUUGa -5'
9171 5' -60.4 NC_002512.2 + 96655 0.66 0.793561
Target:  5'- gCgCCGCCGccCUCCCGUccucgcuggGCGGaCGACg -3'
miRNA:   3'- aGgGGCGGUa-GAGGGCA---------CGCC-GUUGa -5'
9171 5' -60.4 NC_002512.2 + 222171 0.67 0.784918
Target:  5'- aUCCCgaCGCCuaCUCCCGggccGCGGcCGGCg -3'
miRNA:   3'- -AGGG--GCGGuaGAGGGCa---CGCC-GUUGa -5'
9171 5' -60.4 NC_002512.2 + 199975 0.67 0.784918
Target:  5'- cUCCCGCCgcGUCcgcgcgCCCG-GCGGgGACg -3'
miRNA:   3'- aGGGGCGG--UAGa-----GGGCaCGCCgUUGa -5'
9171 5' -60.4 NC_002512.2 + 128399 0.67 0.784918
Target:  5'- aCCCCGUC-UCgagCCCG-GUGGCGGg- -3'
miRNA:   3'- aGGGGCGGuAGa--GGGCaCGCCGUUga -5'
9171 5' -60.4 NC_002512.2 + 101698 0.67 0.776151
Target:  5'- gUCCCGCCGgcggCCCGcuCGGCGACc -3'
miRNA:   3'- aGGGGCGGUaga-GGGCacGCCGUUGa -5'
9171 5' -60.4 NC_002512.2 + 98367 0.67 0.776151
Target:  5'- gUCCUucaCGgCGUCUCCCGUcccggggcgcaGCuGGCAACa -3'
miRNA:   3'- -AGGG---GCgGUAGAGGGCA-----------CG-CCGUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.