miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9172 3' -47.1 NC_002512.2 + 227625 0.66 0.99999
Target:  5'- gGCGGCgGCG-GCgagGUCAgGCGAcgGAg -3'
miRNA:   3'- -UGUCG-CGCuCGaaaUAGU-UGCUuaCU- -5'
9172 3' -47.1 NC_002512.2 + 89240 0.66 0.99999
Target:  5'- gACGGCGacgGAGCUc--UCG-CGGAUGAa -3'
miRNA:   3'- -UGUCGCg--CUCGAaauAGUuGCUUACU- -5'
9172 3' -47.1 NC_002512.2 + 207723 0.66 0.99999
Target:  5'- cCAGCGcCGAGUccaucGUCGGCGGggGAc -3'
miRNA:   3'- uGUCGC-GCUCGaaa--UAGUUGCUuaCU- -5'
9172 3' -47.1 NC_002512.2 + 163602 0.66 0.999982
Target:  5'- uGCuGCGCGAGCUgaguaagAUCAACc----- -3'
miRNA:   3'- -UGuCGCGCUCGAaa-----UAGUUGcuuacu -5'
9172 3' -47.1 NC_002512.2 + 221398 0.66 0.999975
Target:  5'- -gGGCGCGGGCggggaggCGGCGggUc- -3'
miRNA:   3'- ugUCGCGCUCGaaaua--GUUGCuuAcu -5'
9172 3' -47.1 NC_002512.2 + 179655 0.66 0.999975
Target:  5'- gACGGCGaCGcGC-UUGUCAGCGccaGGUGGu -3'
miRNA:   3'- -UGUCGC-GCuCGaAAUAGUUGC---UUACU- -5'
9172 3' -47.1 NC_002512.2 + 184549 0.66 0.999966
Target:  5'- gGCGGCGCGGGC-----CGGCGGAcGGc -3'
miRNA:   3'- -UGUCGCGCUCGaaauaGUUGCUUaCU- -5'
9172 3' -47.1 NC_002512.2 + 119635 0.66 0.999966
Target:  5'- cCAGCGCGGcGCUUUAUaAGCcGAUGc -3'
miRNA:   3'- uGUCGCGCU-CGAAAUAgUUGcUUACu -5'
9172 3' -47.1 NC_002512.2 + 97838 0.66 0.999966
Target:  5'- gGCGGCGCGggggaAGCggaggCGACGAccGAg -3'
miRNA:   3'- -UGUCGCGC-----UCGaaauaGUUGCUuaCU- -5'
9172 3' -47.1 NC_002512.2 + 140323 0.67 0.999954
Target:  5'- cGCAG-GCGAGCUUUA-CAuCGAAg-- -3'
miRNA:   3'- -UGUCgCGCUCGAAAUaGUuGCUUacu -5'
9172 3' -47.1 NC_002512.2 + 158964 0.67 0.999939
Target:  5'- aACGGCgGCGAGCggu-UCGGCGGc--- -3'
miRNA:   3'- -UGUCG-CGCUCGaaauAGUUGCUuacu -5'
9172 3' -47.1 NC_002512.2 + 166936 0.67 0.999939
Target:  5'- uGCGGCGaCGAGaag---CAGCGGAUGu -3'
miRNA:   3'- -UGUCGC-GCUCgaaauaGUUGCUUACu -5'
9172 3' -47.1 NC_002512.2 + 179239 0.67 0.99992
Target:  5'- aGCAGCugGCGGGCcgUGUCggUGAAc-- -3'
miRNA:   3'- -UGUCG--CGCUCGaaAUAGuuGCUUacu -5'
9172 3' -47.1 NC_002512.2 + 196832 0.67 0.999863
Target:  5'- --uGCGaCGGGCUg---CGGCGGAUGGa -3'
miRNA:   3'- uguCGC-GCUCGAaauaGUUGCUUACU- -5'
9172 3' -47.1 NC_002512.2 + 206871 0.69 0.999135
Target:  5'- gGCGGCGcCGAGCUcgc-CGACGggUa- -3'
miRNA:   3'- -UGUCGC-GCUCGAaauaGUUGCuuAcu -5'
9172 3' -47.1 NC_002512.2 + 164914 0.69 0.999135
Target:  5'- cGCAGUGCGAGCUcUcgCcGCGuAUGu -3'
miRNA:   3'- -UGUCGCGCUCGAaAuaGuUGCuUACu -5'
9172 3' -47.1 NC_002512.2 + 228146 0.69 0.998942
Target:  5'- -gGGCGCGAGCUcagGUCcacGCGGAgccgGAg -3'
miRNA:   3'- ugUCGCGCUCGAaa-UAGu--UGCUUa---CU- -5'
9172 3' -47.1 NC_002512.2 + 161266 0.7 0.998687
Target:  5'- -aGGCGCGGGCUUUgccugacGUgGGCGAGUc- -3'
miRNA:   3'- ugUCGCGCUCGAAA-------UAgUUGCUUAcu -5'
9172 3' -47.1 NC_002512.2 + 189290 0.7 0.998125
Target:  5'- cGCGGCGCGuGGUUUUAUCuuACGGuaagGAg -3'
miRNA:   3'- -UGUCGCGC-UCGAAAUAGu-UGCUua--CU- -5'
9172 3' -47.1 NC_002512.2 + 157171 0.7 0.997328
Target:  5'- gGCGGCGUGGGCggcggcgCGACGAucgaccgcAUGAa -3'
miRNA:   3'- -UGUCGCGCUCGaaaua--GUUGCU--------UACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.