miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9173 3' -56.5 NC_002512.2 + 209414 0.66 0.954829
Target:  5'- -cUACCaGUGCaCCAUGCACaCCGCGc -3'
miRNA:   3'- acAUGGcUAUG-GGUGCGUGcGGCGUc -5'
9173 3' -56.5 NC_002512.2 + 196372 0.66 0.950951
Target:  5'- --cGCCGGccggGCUCACuucgGgACGCCGCGGg -3'
miRNA:   3'- acaUGGCUa---UGGGUG----CgUGCGGCGUC- -5'
9173 3' -56.5 NC_002512.2 + 147454 0.66 0.950951
Target:  5'- --gACCGAcGCCCccuCGUccccucCGCCGCGGg -3'
miRNA:   3'- acaUGGCUaUGGGu--GCGu-----GCGGCGUC- -5'
9173 3' -56.5 NC_002512.2 + 203296 0.66 0.950951
Target:  5'- cGUGgCGAaGCCgGCcguGCACGUCGCGu -3'
miRNA:   3'- aCAUgGCUaUGGgUG---CGUGCGGCGUc -5'
9173 3' -56.5 NC_002512.2 + 160086 0.66 0.950951
Target:  5'- gGUGCUGGUGCagcuggaUACGgACGCC-CAGa -3'
miRNA:   3'- aCAUGGCUAUGg------GUGCgUGCGGcGUC- -5'
9173 3' -56.5 NC_002512.2 + 126684 0.66 0.950951
Target:  5'- --cGCCucgGAUACCCcCGCuCGCCggGCAGg -3'
miRNA:   3'- acaUGG---CUAUGGGuGCGuGCGG--CGUC- -5'
9173 3' -56.5 NC_002512.2 + 106907 0.66 0.950951
Target:  5'- cGUGCCaccaGGcGCCCucGCGCAC-CCGCAc -3'
miRNA:   3'- aCAUGG----CUaUGGG--UGCGUGcGGCGUc -5'
9173 3' -56.5 NC_002512.2 + 137930 0.66 0.946856
Target:  5'- cGUGCCGcuccGCCCugGCgaucGCGCC-CAa -3'
miRNA:   3'- aCAUGGCua--UGGGugCG----UGCGGcGUc -5'
9173 3' -56.5 NC_002512.2 + 121461 0.66 0.946856
Target:  5'- gGU-CCGc--CCCGCGCcCGCCGCc- -3'
miRNA:   3'- aCAuGGCuauGGGUGCGuGCGGCGuc -5'
9173 3' -56.5 NC_002512.2 + 213354 0.66 0.946856
Target:  5'- --aGCCaggggGAcGCCCGCGCugGCgGCGa -3'
miRNA:   3'- acaUGG-----CUaUGGGUGCGugCGgCGUc -5'
9173 3' -56.5 NC_002512.2 + 221501 0.66 0.946856
Target:  5'- cGU-CCuAUuuuCCUGCGCgGCGCCGCGGa -3'
miRNA:   3'- aCAuGGcUAu--GGGUGCG-UGCGGCGUC- -5'
9173 3' -56.5 NC_002512.2 + 222627 0.66 0.946856
Target:  5'- ---cCCGAU-CCCgACGgACGCCGCu- -3'
miRNA:   3'- acauGGCUAuGGG-UGCgUGCGGCGuc -5'
9173 3' -56.5 NC_002512.2 + 92647 0.66 0.946434
Target:  5'- --cGCCGggACCCGCGCGgauccgggacggcCGcCCGCGc -3'
miRNA:   3'- acaUGGCuaUGGGUGCGU-------------GC-GGCGUc -5'
9173 3' -56.5 NC_002512.2 + 199623 0.66 0.942542
Target:  5'- --cGCCG--GCUC-CGCGCGuCCGCGGg -3'
miRNA:   3'- acaUGGCuaUGGGuGCGUGC-GGCGUC- -5'
9173 3' -56.5 NC_002512.2 + 227799 0.66 0.942542
Target:  5'- cGUACCGcccgcucccGCCCggcguggacuccGCGCucccgcugGCGCCGCAGc -3'
miRNA:   3'- aCAUGGCua-------UGGG------------UGCG--------UGCGGCGUC- -5'
9173 3' -56.5 NC_002512.2 + 108349 0.66 0.942542
Target:  5'- cGUGCuCGAc-CCCG-GCGCGCCGgAGc -3'
miRNA:   3'- aCAUG-GCUauGGGUgCGUGCGGCgUC- -5'
9173 3' -56.5 NC_002512.2 + 171659 0.66 0.942542
Target:  5'- cUGUugCGGgacAUCUACGCgcgcggggugcGCGCCGCGc -3'
miRNA:   3'- -ACAugGCUa--UGGGUGCG-----------UGCGGCGUc -5'
9173 3' -56.5 NC_002512.2 + 101585 0.66 0.942542
Target:  5'- gGUGCCGcgACUCGggcgUGCAC-CCGCAc -3'
miRNA:   3'- aCAUGGCuaUGGGU----GCGUGcGGCGUc -5'
9173 3' -56.5 NC_002512.2 + 213618 0.66 0.938006
Target:  5'- cGU-CCGGUcccugACuCUugGC-CGCCGCGGg -3'
miRNA:   3'- aCAuGGCUA-----UG-GGugCGuGCGGCGUC- -5'
9173 3' -56.5 NC_002512.2 + 204969 0.66 0.938006
Target:  5'- --gGCCGA-GCCCG---ACGCCGCGGg -3'
miRNA:   3'- acaUGGCUaUGGGUgcgUGCGGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.