miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9173 5' -58.2 NC_002512.2 + 149250 0.66 0.911322
Target:  5'- cGCCgCCGCCGCGGacGGccggaCGGGUa -3'
miRNA:   3'- cUGG-GGCGGCGCCaaCCaua--GCCUAg -5'
9173 5' -58.2 NC_002512.2 + 222571 0.66 0.899446
Target:  5'- -gUCCCGCCGCGGcccgccGUcgCGGAg- -3'
miRNA:   3'- cuGGGGCGGCGCCaac---CAuaGCCUag -5'
9173 5' -58.2 NC_002512.2 + 87774 0.66 0.893188
Target:  5'- aGCUCCgGCCGCcgacgGGUcGGUAcCGGGUCc -3'
miRNA:   3'- cUGGGG-CGGCG-----CCAaCCAUaGCCUAG- -5'
9173 5' -58.2 NC_002512.2 + 170653 0.66 0.886721
Target:  5'- cGCCUCGCCuGCGGUUuccucGUCGGGUg -3'
miRNA:   3'- cUGGGGCGG-CGCCAAcca--UAGCCUAg -5'
9173 5' -58.2 NC_002512.2 + 146691 0.66 0.886721
Target:  5'- cGCCCCGCgCGCGGacGGcgaCGGAg- -3'
miRNA:   3'- cUGGGGCG-GCGCCaaCCauaGCCUag -5'
9173 5' -58.2 NC_002512.2 + 153288 0.67 0.880047
Target:  5'- uGGCUCCGCUG-GGUcGGUc-CGGGUCg -3'
miRNA:   3'- -CUGGGGCGGCgCCAaCCAuaGCCUAG- -5'
9173 5' -58.2 NC_002512.2 + 222531 0.67 0.873171
Target:  5'- cGGCCgCCGUCGCGG-UGGgc-CGGGc- -3'
miRNA:   3'- -CUGG-GGCGGCGCCaACCauaGCCUag -5'
9173 5' -58.2 NC_002512.2 + 194965 0.67 0.873171
Target:  5'- cGACCCCGCCGuCGGUcucGUccuccucUCGGcgCa -3'
miRNA:   3'- -CUGGGGCGGC-GCCAac-CAu------AGCCuaG- -5'
9173 5' -58.2 NC_002512.2 + 217499 0.67 0.87107
Target:  5'- cGCCgCCGCCGCccgaaggcgagcucGGggGGUcgCGGuUCa -3'
miRNA:   3'- cUGG-GGCGGCG--------------CCaaCCAuaGCCuAG- -5'
9173 5' -58.2 NC_002512.2 + 201659 0.67 0.86538
Target:  5'- cGGCCCCgGCCGCGGUUccuucuucggcgaGGg--CGGccgcGUCu -3'
miRNA:   3'- -CUGGGG-CGGCGCCAA-------------CCauaGCC----UAG- -5'
9173 5' -58.2 NC_002512.2 + 176625 0.67 0.858831
Target:  5'- cACCCCGUCGgGGgc----UCGGAUCg -3'
miRNA:   3'- cUGGGGCGGCgCCaaccauAGCCUAG- -5'
9173 5' -58.2 NC_002512.2 + 111680 0.67 0.858094
Target:  5'- gGGCCCCGUCGCaccagacGGccucggGGUcgCGGAUg -3'
miRNA:   3'- -CUGGGGCGGCG-------CCaa----CCAuaGCCUAg -5'
9173 5' -58.2 NC_002512.2 + 173624 0.68 0.835927
Target:  5'- cGCCuCCGCCGCGGc-GGcgaacccCGGGUCg -3'
miRNA:   3'- cUGG-GGCGGCGCCaaCCaua----GCCUAG- -5'
9173 5' -58.2 NC_002512.2 + 184208 0.68 0.826328
Target:  5'- -uCCCCGgaCCGCGGguucucucuggGGUcgaccGUCGGGUCg -3'
miRNA:   3'- cuGGGGC--GGCGCCaa---------CCA-----UAGCCUAG- -5'
9173 5' -58.2 NC_002512.2 + 87867 0.68 0.819799
Target:  5'- cGGCCCCcgGCCGCGGaagagacGGccgcCGGAUCg -3'
miRNA:   3'- -CUGGGG--CGGCGCCaa-----CCaua-GCCUAG- -5'
9173 5' -58.2 NC_002512.2 + 168129 0.68 0.819799
Target:  5'- gGGCCCgGCCGCGGcgagGGgcUgGGGg- -3'
miRNA:   3'- -CUGGGgCGGCGCCaa--CCauAgCCUag -5'
9173 5' -58.2 NC_002512.2 + 207765 0.68 0.803045
Target:  5'- aGCCgCCGCCGUGG-UGGUugCGGGa- -3'
miRNA:   3'- cUGG-GGCGGCGCCaACCAuaGCCUag -5'
9173 5' -58.2 NC_002512.2 + 182446 0.69 0.776871
Target:  5'- cGGCCuCCGCCguGCGGgcgUGGUGcucguggcagUGGAUCa -3'
miRNA:   3'- -CUGG-GGCGG--CGCCa--ACCAUa---------GCCUAG- -5'
9173 5' -58.2 NC_002512.2 + 200539 0.69 0.767898
Target:  5'- cGugUCCGUcuCGCGGUcgcGGUAUCGGGg- -3'
miRNA:   3'- -CugGGGCG--GCGCCAa--CCAUAGCCUag -5'
9173 5' -58.2 NC_002512.2 + 189195 0.69 0.758815
Target:  5'- cACCCagguCGCCGCGGgcGGcaugcucgacGUCGGAUCc -3'
miRNA:   3'- cUGGG----GCGGCGCCaaCCa---------UAGCCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.