miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9174 5' -54.5 NC_002512.2 + 205073 0.66 0.981766
Target:  5'- ---aCugGCUgGAGaGCgGCGGcGAUCCg -3'
miRNA:   3'- agcaGugCGAgCUC-CG-CGCCuUUAGG- -5'
9174 5' -54.5 NC_002512.2 + 216056 0.66 0.981766
Target:  5'- aCGg-GCGUUCGGGGC-CGGG--UCCu -3'
miRNA:   3'- aGCagUGCGAGCUCCGcGCCUuuAGG- -5'
9174 5' -54.5 NC_002512.2 + 143228 0.66 0.981766
Target:  5'- cCGUC-CGCUCG-GaCGCGGccaccgcGAUCCa -3'
miRNA:   3'- aGCAGuGCGAGCuCcGCGCCu------UUAGG- -5'
9174 5' -54.5 NC_002512.2 + 116925 0.66 0.979712
Target:  5'- uUCGUgACGCccgacgacUCGGGGCucgacCGGGGcgCCa -3'
miRNA:   3'- -AGCAgUGCG--------AGCUCCGc----GCCUUuaGG- -5'
9174 5' -54.5 NC_002512.2 + 193954 0.66 0.979712
Target:  5'- gUCGUCugGCgcgaGAGGCcGcCGGcGAgcUCCu -3'
miRNA:   3'- -AGCAGugCGag--CUCCG-C-GCCuUU--AGG- -5'
9174 5' -54.5 NC_002512.2 + 108124 0.66 0.977491
Target:  5'- -gGUC-CGCggucccgaGAGGCGCGcGAAGagcUCCg -3'
miRNA:   3'- agCAGuGCGag------CUCCGCGC-CUUU---AGG- -5'
9174 5' -54.5 NC_002512.2 + 93272 0.66 0.977491
Target:  5'- -gGcCACGCUgGAgGGCGCGGc---CCg -3'
miRNA:   3'- agCaGUGCGAgCU-CCGCGCCuuuaGG- -5'
9174 5' -54.5 NC_002512.2 + 98164 0.66 0.977491
Target:  5'- gUCGcCGCGgUCuggacGGGCGCGGcgaccGUCCg -3'
miRNA:   3'- -AGCaGUGCgAGc----UCCGCGCCuu---UAGG- -5'
9174 5' -54.5 NC_002512.2 + 99536 0.66 0.977491
Target:  5'- gUGUCcCGCUCGAugcagcgcaggaGGCGCGuGAA--CCg -3'
miRNA:   3'- aGCAGuGCGAGCU------------CCGCGC-CUUuaGG- -5'
9174 5' -54.5 NC_002512.2 + 106771 0.66 0.977491
Target:  5'- aCGgC-CGC-CGAcGGCGCGGGAcgguUCCg -3'
miRNA:   3'- aGCaGuGCGaGCU-CCGCGCCUUu---AGG- -5'
9174 5' -54.5 NC_002512.2 + 227423 0.66 0.977491
Target:  5'- cUC-UCGCGCgCG-GGCGCGGGccgcGGUCa -3'
miRNA:   3'- -AGcAGUGCGaGCuCCGCGCCU----UUAGg -5'
9174 5' -54.5 NC_002512.2 + 216628 0.66 0.97726
Target:  5'- uUCGcCAC-CUCGuGGUagaacacGCGGAAGUCg -3'
miRNA:   3'- -AGCaGUGcGAGCuCCG-------CGCCUUUAGg -5'
9174 5' -54.5 NC_002512.2 + 112156 0.66 0.97726
Target:  5'- -gGUCgacggcgagccgGCGCUCGAGcccgcacGCGCGGAGcauggCCa -3'
miRNA:   3'- agCAG------------UGCGAGCUC-------CGCGCCUUua---GG- -5'
9174 5' -54.5 NC_002512.2 + 99622 0.67 0.975097
Target:  5'- cUCGUCGCGgUCGucGCccuCGGAGggCCc -3'
miRNA:   3'- -AGCAGUGCgAGCucCGc--GCCUUuaGG- -5'
9174 5' -54.5 NC_002512.2 + 190889 0.67 0.972521
Target:  5'- gCGUCGCGgggCGAGGCGaacCGGAGGa-- -3'
miRNA:   3'- aGCAGUGCga-GCUCCGC---GCCUUUagg -5'
9174 5' -54.5 NC_002512.2 + 213829 0.67 0.972521
Target:  5'- aCGagAguCUCGAGGCGCGGcgcggggagaAGAUCCc -3'
miRNA:   3'- aGCagUgcGAGCUCCGCGCC----------UUUAGG- -5'
9174 5' -54.5 NC_002512.2 + 200308 0.67 0.969759
Target:  5'- cUCGUC-CGCccUCGGGGaGCGGcu-UCCc -3'
miRNA:   3'- -AGCAGuGCG--AGCUCCgCGCCuuuAGG- -5'
9174 5' -54.5 NC_002512.2 + 82226 0.67 0.968009
Target:  5'- gUCGUCGCGCccccgCGAggagggaugcgaagaGGCGgGGAGgAUCg -3'
miRNA:   3'- -AGCAGUGCGa----GCU---------------CCGCgCCUU-UAGg -5'
9174 5' -54.5 NC_002512.2 + 182118 0.67 0.966803
Target:  5'- aUCGUCGCGCagaagUCGuugaAGGCGUGcAGcUCCa -3'
miRNA:   3'- -AGCAGUGCG-----AGC----UCCGCGCcUUuAGG- -5'
9174 5' -54.5 NC_002512.2 + 108343 0.67 0.966803
Target:  5'- gCGUCucgUGCUCGAccccGGCGCgccGGAGcUCCc -3'
miRNA:   3'- aGCAGu--GCGAGCU----CCGCG---CCUUuAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.