miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9175 3' -58.5 NC_002512.2 + 218969 0.67 0.874291
Target:  5'- cGUcGCCGGCUgggagguCCggcCCGGGGUCCGc -3'
miRNA:   3'- -CGuUGGCCGG-------GGauaGGCUCCAGGCu -5'
9175 3' -58.5 NC_002512.2 + 186243 0.67 0.86802
Target:  5'- gGCGAggucCCGGUCCUcgGUCaCGAGGUCUu- -3'
miRNA:   3'- -CGUU----GGCCGGGGa-UAG-GCUCCAGGcu -5'
9175 3' -58.5 NC_002512.2 + 113147 0.67 0.86802
Target:  5'- cGCGgggcGCCGGCCUCg--CCGcGG-CCGGg -3'
miRNA:   3'- -CGU----UGGCCGGGGauaGGCuCCaGGCU- -5'
9175 3' -58.5 NC_002512.2 + 167802 0.67 0.86802
Target:  5'- aGCAagaaGCgGGCCCCcaacuaCGAGGUggCCGAg -3'
miRNA:   3'- -CGU----UGgCCGGGGauag--GCUCCA--GGCU- -5'
9175 3' -58.5 NC_002512.2 + 105198 0.67 0.86802
Target:  5'- cGCAGCaGGCCgUgua--GAGGUCCGAg -3'
miRNA:   3'- -CGUUGgCCGGgGauaggCUCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 152688 0.67 0.860871
Target:  5'- gGCGGCCGGucucgucgcguCCCCgg-UCGGGGUgCGGc -3'
miRNA:   3'- -CGUUGGCC-----------GGGGauaGGCUCCAgGCU- -5'
9175 3' -58.5 NC_002512.2 + 124777 0.67 0.860871
Target:  5'- aCGACCGcgcaGUCCCggGUCCG-GGUCCa- -3'
miRNA:   3'- cGUUGGC----CGGGGa-UAGGCuCCAGGcu -5'
9175 3' -58.5 NC_002512.2 + 153283 0.67 0.853535
Target:  5'- uCGGCUGGCUCCg--CUGGgucGGUCCGGg -3'
miRNA:   3'- cGUUGGCCGGGGauaGGCU---CCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 220019 0.67 0.846019
Target:  5'- uCGAgaGGCCgCUccGUCuCGGGGUCCGGg -3'
miRNA:   3'- cGUUggCCGGgGA--UAG-GCUCCAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 190545 0.67 0.846019
Target:  5'- aGgGACCGGCUgCUGggcaCCGAGGcggCCGu -3'
miRNA:   3'- -CgUUGGCCGGgGAUa---GGCUCCa--GGCu -5'
9175 3' -58.5 NC_002512.2 + 227877 0.68 0.835988
Target:  5'- uGguGCCGGCUCaggcgacgcgggcgaGUCCGAGG-CCGGa -3'
miRNA:   3'- -CguUGGCCGGGga-------------UAGGCUCCaGGCU- -5'
9175 3' -58.5 NC_002512.2 + 147665 0.68 0.830469
Target:  5'- cGUcACCGGCCCCgcuUCCcgccccggGAGGacgCCGGc -3'
miRNA:   3'- -CGuUGGCCGGGGau-AGG--------CUCCa--GGCU- -5'
9175 3' -58.5 NC_002512.2 + 209036 0.68 0.830469
Target:  5'- gGCGGCCGcGUCCCggagcgauUCCGAcGGcuccUCCGAc -3'
miRNA:   3'- -CGUUGGC-CGGGGau------AGGCU-CC----AGGCU- -5'
9175 3' -58.5 NC_002512.2 + 218443 0.68 0.830469
Target:  5'- ---cCCGGCCCCcGUCCGcGGcGUCCc- -3'
miRNA:   3'- cguuGGCCGGGGaUAGGC-UC-CAGGcu -5'
9175 3' -58.5 NC_002512.2 + 188265 0.68 0.822447
Target:  5'- --cGCUGGCCCCcaacaCCGAGGU-CGAg -3'
miRNA:   3'- cguUGGCCGGGGaua--GGCUCCAgGCU- -5'
9175 3' -58.5 NC_002512.2 + 158295 0.68 0.822447
Target:  5'- gGCGuGCCGGCCCCcaaggCCGcGGucgUCCGGc -3'
miRNA:   3'- -CGU-UGGCCGGGGaua--GGCuCC---AGGCU- -5'
9175 3' -58.5 NC_002512.2 + 144587 0.68 0.821636
Target:  5'- aGCGGCaGGCgucgaucCCCUcgCaCGAGGUCCGc -3'
miRNA:   3'- -CGUUGgCCG-------GGGAuaG-GCUCCAGGCu -5'
9175 3' -58.5 NC_002512.2 + 138966 0.68 0.814269
Target:  5'- cGC-GCCGGCCCCguucgcggCCGccaGUCCGGc -3'
miRNA:   3'- -CGuUGGCCGGGGaua-----GGCuc-CAGGCU- -5'
9175 3' -58.5 NC_002512.2 + 157057 0.68 0.814269
Target:  5'- gGCAagGCgGGCguCCCgggGUCCGGGGUcgCCGGc -3'
miRNA:   3'- -CGU--UGgCCG--GGGa--UAGGCUCCA--GGCU- -5'
9175 3' -58.5 NC_002512.2 + 198551 0.68 0.805943
Target:  5'- cGUAGCCGGCCagggcgCUGUCC-AGGUCg-- -3'
miRNA:   3'- -CGUUGGCCGGg-----GAUAGGcUCCAGgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.