miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9175 5' -58.6 NC_002512.2 + 149416 0.66 0.872267
Target:  5'- gCCgcgaGGGGACcGCGGCGGG-GGCGGg -3'
miRNA:   3'- aGGg---CUCCUGcUGCCGCUCaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 218936 0.66 0.872267
Target:  5'- gCCCGAGGGCGcCGGCGuccucGuCGAc -3'
miRNA:   3'- aGGGCUCCUGCuGCCGCucau-C-GCUa -5'
9175 5' -58.6 NC_002512.2 + 150248 0.66 0.872267
Target:  5'- uUCUCGgacgacgaggGGGACGACGcCGAGUAccGCGAc -3'
miRNA:   3'- -AGGGC----------UCCUGCUGCcGCUCAU--CGCUa -5'
9175 5' -58.6 NC_002512.2 + 97817 0.66 0.872267
Target:  5'- cUCCGGGGACG-CGGaguaGAG-GGCGGc -3'
miRNA:   3'- aGGGCUCCUGCuGCCg---CUCaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 191023 0.67 0.865193
Target:  5'- -aCCGAGGugccuGCGA-GGCGGGgcGCGGc -3'
miRNA:   3'- agGGCUCC-----UGCUgCCGCUCauCGCUa -5'
9175 5' -58.6 NC_002512.2 + 39537 0.67 0.860857
Target:  5'- uUCCCGgguggugaaggacgcGGGACGgugccaaggGCGGCGAcgGGCGAc -3'
miRNA:   3'- -AGGGC---------------UCCUGC---------UGCCGCUcaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 151049 0.67 0.857928
Target:  5'- gCCCGucacgcGGuccuCGACGGCGGGggauGCGGUc -3'
miRNA:   3'- aGGGCu-----CCu---GCUGCCGCUCau--CGCUA- -5'
9175 5' -58.6 NC_002512.2 + 153389 0.67 0.857928
Target:  5'- nUCCgGAGcGACGuggagcgcgGCGGCGgucgaGGUGGCGGa -3'
miRNA:   3'- -AGGgCUC-CUGC---------UGCCGC-----UCAUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 204975 0.67 0.857928
Target:  5'- gCCCGAcgccgcGGGCGACggggaccggaaGGCGGG-GGCGAa -3'
miRNA:   3'- aGGGCU------CCUGCUG-----------CCGCUCaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 216299 0.67 0.851231
Target:  5'- uUCCCGGGGACGugGGUcaccugcaucuGCGGc -3'
miRNA:   3'- -AGGGCUCCUGCugCCGcucau------CGCUa -5'
9175 5' -58.6 NC_002512.2 + 223892 0.67 0.850477
Target:  5'- -gCCGAGGAgGAgGaGCGGG-AGCGGc -3'
miRNA:   3'- agGGCUCCUgCUgC-CGCUCaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 94399 0.67 0.835041
Target:  5'- aUCuuGAGGACGGCGGUcu-UGGCGc- -3'
miRNA:   3'- -AGggCUCCUGCUGCCGcucAUCGCua -5'
9175 5' -58.6 NC_002512.2 + 117502 0.67 0.835041
Target:  5'- aUCCCGGGuucgcgcuGACGGCGGUGAGga-CGGa -3'
miRNA:   3'- -AGGGCUC--------CUGCUGCCGCUCaucGCUa -5'
9175 5' -58.6 NC_002512.2 + 189813 0.67 0.835041
Target:  5'- aUCCGGGGACacgaGACGGUgGAGUcucgucccgcgGGCGAa -3'
miRNA:   3'- aGGGCUCCUG----CUGCCG-CUCA-----------UCGCUa -5'
9175 5' -58.6 NC_002512.2 + 207877 0.67 0.834251
Target:  5'- gUCCGGGGACGGCuucuggcgcucucGGCG-GUGGCu-- -3'
miRNA:   3'- aGGGCUCCUGCUG-------------CCGCuCAUCGcua -5'
9175 5' -58.6 NC_002512.2 + 90511 0.67 0.832666
Target:  5'- -gCCGAGGcCGGCGGCGgacgacgggaacgcGGUGGgGGa -3'
miRNA:   3'- agGGCUCCuGCUGCCGC--------------UCAUCgCUa -5'
9175 5' -58.6 NC_002512.2 + 5196 0.67 0.827068
Target:  5'- cCCCGAGG-CGAcCGGaccucCGAGUGGCu-- -3'
miRNA:   3'- aGGGCUCCuGCU-GCC-----GCUCAUCGcua -5'
9175 5' -58.6 NC_002512.2 + 132575 0.67 0.827068
Target:  5'- cCCCGGcGGGCG-CGGCcagGGGUucGGCGAg -3'
miRNA:   3'- aGGGCU-CCUGCuGCCG---CUCA--UCGCUa -5'
9175 5' -58.6 NC_002512.2 + 75260 0.67 0.826262
Target:  5'- gUCCCGuccccacgauggcGGcGACGGCGGCGgcGGcGGCGAc -3'
miRNA:   3'- -AGGGC-------------UC-CUGCUGCCGC--UCaUCGCUa -5'
9175 5' -58.6 NC_002512.2 + 172624 0.68 0.818934
Target:  5'- aCCgGAGGcugaguuucgGCGaACGGCG-GUAGCGGc -3'
miRNA:   3'- aGGgCUCC----------UGC-UGCCGCuCAUCGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.