miRNA display CGI


Results 1 - 20 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9177 3' -54.8 NC_002512.2 + 99670 0.66 0.981884
Target:  5'- cGGCAGCUcgGGcgucGCGUCgCUGU-CGUCg -3'
miRNA:   3'- cCUGUCGGuaCC----UGCAG-GAUAcGCGG- -5'
9177 3' -54.8 NC_002512.2 + 204926 0.66 0.981884
Target:  5'- gGGACGGguucgacucccuCC-UGGACGuUCCUcgGuCGCUg -3'
miRNA:   3'- -CCUGUC------------GGuACCUGC-AGGAuaC-GCGG- -5'
9177 3' -54.8 NC_002512.2 + 213217 0.66 0.979831
Target:  5'- gGGACcgccgGGUCGUGGcCG-CCaacgGCGCCg -3'
miRNA:   3'- -CCUG-----UCGGUACCuGCaGGaua-CGCGG- -5'
9177 3' -54.8 NC_002512.2 + 95847 0.66 0.979831
Target:  5'- aGGA-GGCCGgggGcGGCGUCCUcccagggccGcGCGCCg -3'
miRNA:   3'- -CCUgUCGGUa--C-CUGCAGGA---------UaCGCGG- -5'
9177 3' -54.8 NC_002512.2 + 164231 0.66 0.979831
Target:  5'- aGGGCAucGgCAUGG-UGUUCg--GCGCCg -3'
miRNA:   3'- -CCUGU--CgGUACCuGCAGGauaCGCGG- -5'
9177 3' -54.8 NC_002512.2 + 229545 0.66 0.97784
Target:  5'- cGGGgAGCCGggcgGGGCG-CCggcggaggagcgcGCGCCg -3'
miRNA:   3'- -CCUgUCGGUa---CCUGCaGGaua----------CGCGG- -5'
9177 3' -54.8 NC_002512.2 + 142 0.66 0.97784
Target:  5'- cGGGgAGCCGggcgGGGCG-CCggcggaggagcgcGCGCCg -3'
miRNA:   3'- -CCUgUCGGUa---CCUGCaGGaua----------CGCGG- -5'
9177 3' -54.8 NC_002512.2 + 107616 0.66 0.97761
Target:  5'- cGGGCu-CCA-GGACGUCCccgcgGcCGCCg -3'
miRNA:   3'- -CCUGucGGUaCCUGCAGGaua--C-GCGG- -5'
9177 3' -54.8 NC_002512.2 + 224857 0.66 0.97761
Target:  5'- -cACGGCCAUGGccACGgCCUGguuuccCGCCu -3'
miRNA:   3'- ccUGUCGGUACC--UGCaGGAUac----GCGG- -5'
9177 3' -54.8 NC_002512.2 + 129533 0.66 0.97761
Target:  5'- aGGACGacGCCGUGcuGCGUggCCg--GCGCCc -3'
miRNA:   3'- -CCUGU--CGGUACc-UGCA--GGauaCGCGG- -5'
9177 3' -54.8 NC_002512.2 + 149890 0.66 0.97761
Target:  5'- cGGCuGCCGcugccUGGACcUCCgc-GCGCCc -3'
miRNA:   3'- cCUGuCGGU-----ACCUGcAGGauaCGCGG- -5'
9177 3' -54.8 NC_002512.2 + 222655 0.66 0.975214
Target:  5'- cGACGGCCGgccgggccgagGGGCG-CCUcgaguucgacUGCGCCc -3'
miRNA:   3'- cCUGUCGGUa----------CCUGCaGGAu---------ACGCGG- -5'
9177 3' -54.8 NC_002512.2 + 176905 0.66 0.975214
Target:  5'- cGGACAGCCGcucGaACGUCUcGUucaggcuccggcGCGCCg -3'
miRNA:   3'- -CCUGUCGGUa--CcUGCAGGaUA------------CGCGG- -5'
9177 3' -54.8 NC_002512.2 + 180591 0.66 0.975214
Target:  5'- ---gGGCCGUGG-CGUCCgucacacaGCGUCg -3'
miRNA:   3'- ccugUCGGUACCuGCAGGaua-----CGCGG- -5'
9177 3' -54.8 NC_002512.2 + 190228 0.66 0.974964
Target:  5'- gGGACGGCCAcgucugcUGcGACGUCaacaucaCGCCc -3'
miRNA:   3'- -CCUGUCGGU-------AC-CUGCAGgauac--GCGG- -5'
9177 3' -54.8 NC_002512.2 + 218872 0.66 0.972636
Target:  5'- gGGGCAccgacGCCGUGcGCGcCCUcaucgcGCGCCa -3'
miRNA:   3'- -CCUGU-----CGGUACcUGCaGGAua----CGCGG- -5'
9177 3' -54.8 NC_002512.2 + 155576 0.66 0.972636
Target:  5'- cGGCA-CCGaGGACGUCCUGUccucCGUCg -3'
miRNA:   3'- cCUGUcGGUaCCUGCAGGAUAc---GCGG- -5'
9177 3' -54.8 NC_002512.2 + 93572 0.66 0.972636
Target:  5'- aGACAucGCgGUGGAgGUCCUGaaccagGCGUg -3'
miRNA:   3'- cCUGU--CGgUACCUgCAGGAUa-----CGCGg -5'
9177 3' -54.8 NC_002512.2 + 175816 0.66 0.969869
Target:  5'- cGGCGGCUccGcuCGUCCgugGCGCCu -3'
miRNA:   3'- cCUGUCGGuaCcuGCAGGauaCGCGG- -5'
9177 3' -54.8 NC_002512.2 + 107846 0.66 0.969869
Target:  5'- cGACGccGCCccGGGCGUgCgcgaGCGCCg -3'
miRNA:   3'- cCUGU--CGGuaCCUGCAgGaua-CGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.