miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9177 5' -57.3 NC_002512.2 + 34940 1.09 0.00348
Target:  5'- gAGGGCGGACAUCAGGACCAACGACCGg -3'
miRNA:   3'- -UCCCGCCUGUAGUCCUGGUUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 227251 0.9 0.068549
Target:  5'- cGGGCGGGCAUCAGGACgAGCGACa- -3'
miRNA:   3'- uCCCGCCUGUAGUCCUGgUUGCUGgc -5'
9177 5' -57.3 NC_002512.2 + 109023 0.79 0.321816
Target:  5'- aGGGGCGGGCGgggacgAGGACCGggggggcucgggggACGACCGg -3'
miRNA:   3'- -UCCCGCCUGUag----UCCUGGU--------------UGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 205227 0.77 0.400174
Target:  5'- cGGGaCGGAgAUCGGGACgGACGACg- -3'
miRNA:   3'- uCCC-GCCUgUAGUCCUGgUUGCUGgc -5'
9177 5' -57.3 NC_002512.2 + 160871 0.76 0.414228
Target:  5'- aGGGGCGGACAcgucggcggaggguUCGGGAagcggGGCGGCCGg -3'
miRNA:   3'- -UCCCGCCUGU--------------AGUCCUgg---UUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 114182 0.76 0.459918
Target:  5'- cGGuGGCGccGGCGUCGGGcCCGGCGGCCa -3'
miRNA:   3'- -UC-CCGC--CUGUAGUCCuGGUUGCUGGc -5'
9177 5' -57.3 NC_002512.2 + 208561 0.75 0.505358
Target:  5'- cAGGGCGGuGCGUCAGG-CCGAguCGACgCGc -3'
miRNA:   3'- -UCCCGCC-UGUAGUCCuGGUU--GCUG-GC- -5'
9177 5' -57.3 NC_002512.2 + 200381 0.75 0.505358
Target:  5'- aGGGGCGGGgGcugCAGGAUCu-CGGCCGg -3'
miRNA:   3'- -UCCCGCCUgUa--GUCCUGGuuGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 221403 0.75 0.505358
Target:  5'- cGGGCGGGgAggcggCGGGucuguCCGACGGCCGc -3'
miRNA:   3'- uCCCGCCUgUa----GUCCu----GGUUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 222220 0.75 0.505358
Target:  5'- cGGGGUGGcCGUCGGGGCC-GCGuCCu -3'
miRNA:   3'- -UCCCGCCuGUAGUCCUGGuUGCuGGc -5'
9177 5' -57.3 NC_002512.2 + 119565 0.74 0.524073
Target:  5'- cGGGCGGACcgCGGGAgcCCGGCGGguCCc -3'
miRNA:   3'- uCCCGCCUGuaGUCCU--GGUUGCU--GGc -5'
9177 5' -57.3 NC_002512.2 + 113497 0.74 0.524073
Target:  5'- cAGGGCgacccgccccggGGACcgCAGGGCCAGCauGACCc -3'
miRNA:   3'- -UCCCG------------CCUGuaGUCCUGGUUG--CUGGc -5'
9177 5' -57.3 NC_002512.2 + 226732 0.74 0.543047
Target:  5'- cGGGCGacGACggCGGGACCGGgcucCGGCCGg -3'
miRNA:   3'- uCCCGC--CUGuaGUCCUGGUU----GCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 220766 0.73 0.571908
Target:  5'- cGaGGCcGACGUCGGGuCCAugGACCu -3'
miRNA:   3'- uC-CCGcCUGUAGUCCuGGUugCUGGc -5'
9177 5' -57.3 NC_002512.2 + 201687 0.73 0.581614
Target:  5'- gAGGGCGGccGCGUCuggugcGGGAUCGGCGGCgGc -3'
miRNA:   3'- -UCCCGCC--UGUAG------UCCUGGUUGCUGgC- -5'
9177 5' -57.3 NC_002512.2 + 169025 0.73 0.591354
Target:  5'- cGGGCGGGCGUCcGcGAgCGGCG-CCGg -3'
miRNA:   3'- uCCCGCCUGUAGuC-CUgGUUGCuGGC- -5'
9177 5' -57.3 NC_002512.2 + 90487 0.73 0.60112
Target:  5'- cGGGGCGuccucGACGggaUCGGGGCCGA-GGCCGg -3'
miRNA:   3'- -UCCCGC-----CUGU---AGUCCUGGUUgCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 146724 0.73 0.610908
Target:  5'- cGGGGCGGcggccGCGgccgcCGGGcCCGACGACCu -3'
miRNA:   3'- -UCCCGCC-----UGUa----GUCCuGGUUGCUGGc -5'
9177 5' -57.3 NC_002512.2 + 156498 0.73 0.62071
Target:  5'- uGGGCGGACA-CGGcGGCCuggGCGGCgGg -3'
miRNA:   3'- uCCCGCCUGUaGUC-CUGGu--UGCUGgC- -5'
9177 5' -57.3 NC_002512.2 + 223781 0.72 0.640332
Target:  5'- gAGGGacCGGACGUCgccgGGGACgucggCGGCGACCGc -3'
miRNA:   3'- -UCCC--GCCUGUAG----UCCUG-----GUUGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.