miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9177 5' -57.3 NC_002512.2 + 207 0.7 0.773606
Target:  5'- cGGGCGGAgA--GGGAgCGGgGACCGa -3'
miRNA:   3'- uCCCGCCUgUagUCCUgGUUgCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 33088 0.68 0.876996
Target:  5'- cGcGCGGuCAUCGGGACCAuaucucgcuguccGCGuCCGc -3'
miRNA:   3'- uCcCGCCuGUAGUCCUGGU-------------UGCuGGC- -5'
9177 5' -57.3 NC_002512.2 + 34940 1.09 0.00348
Target:  5'- gAGGGCGGACAUCAGGACCAACGACCGg -3'
miRNA:   3'- -UCCCGCCUGUAGUCCUGGUUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 70640 0.66 0.940249
Target:  5'- --aGUGuGcCGUCAGGACCAuucACGACCu -3'
miRNA:   3'- uccCGC-CuGUAGUCCUGGU---UGCUGGc -5'
9177 5' -57.3 NC_002512.2 + 87835 0.68 0.870728
Target:  5'- cGGcCGGGCGUCGGGcCCucGCGGCgGg -3'
miRNA:   3'- uCCcGCCUGUAGUCCuGGu-UGCUGgC- -5'
9177 5' -57.3 NC_002512.2 + 88425 0.67 0.907612
Target:  5'- cAGGGCGaagacgaaaccgcaGGCGUCccGGACCAGCaGGCgGg -3'
miRNA:   3'- -UCCCGC--------------CUGUAGu-CCUGGUUG-CUGgC- -5'
9177 5' -57.3 NC_002512.2 + 90432 0.68 0.856233
Target:  5'- -aGGCGGAgAagggCAGGAagggCGGCGGCCGg -3'
miRNA:   3'- ucCCGCCUgUa---GUCCUg---GUUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 90487 0.73 0.60112
Target:  5'- cGGGGCGuccucGACGggaUCGGGGCCGA-GGCCGg -3'
miRNA:   3'- -UCCCGC-----CUGU---AGUCCUGGUUgCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 92142 0.69 0.825056
Target:  5'- cGGGCGcugcGGCGcgugCAGGACCugcCGACCa -3'
miRNA:   3'- uCCCGC----CUGUa---GUCCUGGuu-GCUGGc -5'
9177 5' -57.3 NC_002512.2 + 94919 0.66 0.920536
Target:  5'- cGGGCaGACAgcUCcGGAUCAcgGCGAgCCGg -3'
miRNA:   3'- uCCCGcCUGU--AGuCCUGGU--UGCU-GGC- -5'
9177 5' -57.3 NC_002512.2 + 95855 0.71 0.689154
Target:  5'- gGGGGCGG-CGUCcucccAGGGCCG-CGcGCCGa -3'
miRNA:   3'- -UCCCGCCuGUAG-----UCCUGGUuGC-UGGC- -5'
9177 5' -57.3 NC_002512.2 + 95984 0.67 0.909363
Target:  5'- gAGGuaGGcCAgcgccCGGGACCGcCGGCCGa -3'
miRNA:   3'- -UCCcgCCuGUa----GUCCUGGUuGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 97835 0.69 0.808473
Target:  5'- gAGGGCGGcGCGg-GGGAagcggaggCGACGACCGa -3'
miRNA:   3'- -UCCCGCC-UGUagUCCUg-------GUUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 98790 0.71 0.727472
Target:  5'- -cGGCGcaccACGUCAGGuaccCCGGCGGCCGg -3'
miRNA:   3'- ucCCGCc---UGUAGUCCu---GGUUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 103298 0.66 0.930831
Target:  5'- gAGGaGcCGGcCGUCguAGGACagGACGGCCGa -3'
miRNA:   3'- -UCC-C-GCCuGUAG--UCCUGg-UUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 103349 0.71 0.689154
Target:  5'- cGGGGCGGACggcacggucgagGUCAGGccGCCGgaGCcGCCGa -3'
miRNA:   3'- -UCCCGCCUG------------UAGUCC--UGGU--UGcUGGC- -5'
9177 5' -57.3 NC_002512.2 + 106470 0.7 0.782517
Target:  5'- cGGGCGG----CGGGACCu-CGACCGc -3'
miRNA:   3'- uCCCGCCuguaGUCCUGGuuGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 108501 0.68 0.863576
Target:  5'- aAGGGCGaGGC--CGGGcCCGGCGcCCGa -3'
miRNA:   3'- -UCCCGC-CUGuaGUCCuGGUUGCuGGC- -5'
9177 5' -57.3 NC_002512.2 + 109023 0.79 0.321816
Target:  5'- aGGGGCGGGCGgggacgAGGACCGggggggcucgggggACGACCGg -3'
miRNA:   3'- -UCCCGCCUGUag----UCCUGGU--------------UGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 109861 0.67 0.903451
Target:  5'- cGuGGCGGcgGUgGGGACCuaccGCGACCa -3'
miRNA:   3'- uC-CCGCCugUAgUCCUGGu---UGCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.