miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9177 5' -57.3 NC_002512.2 + 223781 0.72 0.640332
Target:  5'- gAGGGacCGGACGUCgccgGGGACgucggCGGCGACCGc -3'
miRNA:   3'- -UCCC--GCCUGUAG----UCCUG-----GUUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 123539 0.72 0.650138
Target:  5'- aGGuGGCGaGCucgCGGGACgAGCGACCGg -3'
miRNA:   3'- -UC-CCGCcUGua-GUCCUGgUUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 149497 0.72 0.650138
Target:  5'- gGGGGCgGGugGUCAaaaGGCCG-CGGCCGg -3'
miRNA:   3'- -UCCCG-CCugUAGUc--CUGGUuGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 157152 0.72 0.650138
Target:  5'- cGGGGCGGGCggCGGGcCgGGCGGCg- -3'
miRNA:   3'- -UCCCGCCUGuaGUCCuGgUUGCUGgc -5'
9177 5' -57.3 NC_002512.2 + 212423 0.72 0.679446
Target:  5'- cGGGCGGGagGUCGaguucGGGCCGGcCGGCCGc -3'
miRNA:   3'- uCCCGCCUg-UAGU-----CCUGGUU-GCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 228000 0.71 0.688185
Target:  5'- gAGGGCcggagccGGACGggacgCGGGACgAgggGCGACCGg -3'
miRNA:   3'- -UCCCG-------CCUGUa----GUCCUGgU---UGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 95855 0.71 0.689154
Target:  5'- gGGGGCGG-CGUCcucccAGGGCCG-CGcGCCGa -3'
miRNA:   3'- -UCCCGCCuGUAG-----UCCUGGUuGC-UGGC- -5'
9177 5' -57.3 NC_002512.2 + 103349 0.71 0.689154
Target:  5'- cGGGGCGGACggcacggucgagGUCAGGccGCCGgaGCcGCCGa -3'
miRNA:   3'- -UCCCGCCUG------------UAGUCC--UGGU--UGcUGGC- -5'
9177 5' -57.3 NC_002512.2 + 119999 0.71 0.708432
Target:  5'- gAGGGCaaGGACAgggaCAGGGCCAucuCGAUgGa -3'
miRNA:   3'- -UCCCG--CCUGUa---GUCCUGGUu--GCUGgC- -5'
9177 5' -57.3 NC_002512.2 + 220322 0.71 0.717986
Target:  5'- gGGGGcCGGGC-UCcggGGGGCCGgACGGCCu -3'
miRNA:   3'- -UCCC-GCCUGuAG---UCCUGGU-UGCUGGc -5'
9177 5' -57.3 NC_002512.2 + 158993 0.71 0.724634
Target:  5'- cGGGGCGGaggcggcggccccgGCGUCcgcgccgggcGGACCGACGACUu -3'
miRNA:   3'- -UCCCGCC--------------UGUAGu---------CCUGGUUGCUGGc -5'
9177 5' -57.3 NC_002512.2 + 98790 0.71 0.727472
Target:  5'- -cGGCGcaccACGUCAGGuaccCCGGCGGCCGg -3'
miRNA:   3'- ucCCGCc---UGUAGUCCu---GGUUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 196421 0.71 0.731246
Target:  5'- gGGGGCGGcggccgggucgggagAgGUCGGGGCCAugGAauaCCu -3'
miRNA:   3'- -UCCCGCC---------------UgUAGUCCUGGUugCU---GGc -5'
9177 5' -57.3 NC_002512.2 + 163654 0.71 0.736883
Target:  5'- cGGGCGGccCGUCAccGCCAGCuGGCCGg -3'
miRNA:   3'- uCCCGCCu-GUAGUccUGGUUG-CUGGC- -5'
9177 5' -57.3 NC_002512.2 + 180565 0.7 0.743421
Target:  5'- -cGGCGGGCuccgguggcucucuAUCAGGGCCGugGCGuCCGu -3'
miRNA:   3'- ucCCGCCUG--------------UAGUCCUGGU--UGCuGGC- -5'
9177 5' -57.3 NC_002512.2 + 206188 0.7 0.74621
Target:  5'- uGGGGCacGGACAcCAGGAagCAGCGGCgGu -3'
miRNA:   3'- -UCCCG--CCUGUaGUCCUg-GUUGCUGgC- -5'
9177 5' -57.3 NC_002512.2 + 196278 0.7 0.754526
Target:  5'- gAGGGgGGAaggaAUCgcugaugcgggugAGGAcCCAGCGGCCGc -3'
miRNA:   3'- -UCCCgCCUg---UAG-------------UCCU-GGUUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 131152 0.7 0.755445
Target:  5'- cAGGGCGGcCGagAGGA--AGCGGCCGa -3'
miRNA:   3'- -UCCCGCCuGUagUCCUggUUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 202536 0.7 0.755445
Target:  5'- gGGGGCGGACGaccCAGGGCUcgcaguCGGCgGa -3'
miRNA:   3'- -UCCCGCCUGUa--GUCCUGGuu----GCUGgC- -5'
9177 5' -57.3 NC_002512.2 + 225421 0.7 0.764579
Target:  5'- cGGGGuCGGG--UUGGGGCCGACG-CCGa -3'
miRNA:   3'- -UCCC-GCCUguAGUCCUGGUUGCuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.