miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9177 5' -57.3 NC_002512.2 + 167739 0.66 0.919998
Target:  5'- cGGGGCgaggagcugccGGGCGUCGGcGACCGGaucgaguacguccUGACCu -3'
miRNA:   3'- -UCCCG-----------CCUGUAGUC-CUGGUU-------------GCUGGc -5'
9177 5' -57.3 NC_002512.2 + 149379 0.67 0.915059
Target:  5'- gAGGGCgcggGGACG-CAGGACUccggcuccucGACgGGCCGc -3'
miRNA:   3'- -UCCCG----CCUGUaGUCCUGG----------UUG-CUGGC- -5'
9177 5' -57.3 NC_002512.2 + 118015 0.67 0.915059
Target:  5'- cGGGGUGGACccGUacgacgAGGACgCGGCGACgGc -3'
miRNA:   3'- -UCCCGCCUG--UAg-----UCCUG-GUUGCUGgC- -5'
9177 5' -57.3 NC_002512.2 + 212507 0.67 0.915059
Target:  5'- cGGGCuGGACG-C-GGACC-ACGAuCCGa -3'
miRNA:   3'- uCCCG-CCUGUaGuCCUGGuUGCU-GGC- -5'
9177 5' -57.3 NC_002512.2 + 226773 0.67 0.909363
Target:  5'- gAGGGCgaGGACGucUCGGGcgacGCCGuggucuCGGCCGc -3'
miRNA:   3'- -UCCCG--CCUGU--AGUCC----UGGUu-----GCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 205008 0.67 0.909363
Target:  5'- gGGGGCGaaacGACgcgccucgGUCGGGGCCGcguccgccgcCGACCGg -3'
miRNA:   3'- -UCCCGC----CUG--------UAGUCCUGGUu---------GCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 193461 0.67 0.909363
Target:  5'- cGGGaGCGGGCccucCGGGACgaggcccaCGACGGCCu -3'
miRNA:   3'- -UCC-CGCCUGua--GUCCUG--------GUUGCUGGc -5'
9177 5' -57.3 NC_002512.2 + 150058 0.67 0.909363
Target:  5'- cGGGGCGGGaggggGGGACCGccGCcGCCGc -3'
miRNA:   3'- -UCCCGCCUguag-UCCUGGU--UGcUGGC- -5'
9177 5' -57.3 NC_002512.2 + 162008 0.67 0.909363
Target:  5'- cGGGauGCGGACcgCcuGGCCGACGGCg- -3'
miRNA:   3'- -UCC--CGCCUGuaGucCUGGUUGCUGgc -5'
9177 5' -57.3 NC_002512.2 + 95984 0.67 0.909363
Target:  5'- gAGGuaGGcCAgcgccCGGGACCGcCGGCCGa -3'
miRNA:   3'- -UCCcgCCuGUa----GUCCUGGUuGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 128443 0.67 0.908782
Target:  5'- cGGGCGGcCAUggcccagCAGGAaCAGCGACa- -3'
miRNA:   3'- uCCCGCCuGUA-------GUCCUgGUUGCUGgc -5'
9177 5' -57.3 NC_002512.2 + 88425 0.67 0.907612
Target:  5'- cAGGGCGaagacgaaaccgcaGGCGUCccGGACCAGCaGGCgGg -3'
miRNA:   3'- -UCCCGC--------------CUGUAGu-CCUGGUUG-CUGgC- -5'
9177 5' -57.3 NC_002512.2 + 118322 0.67 0.903451
Target:  5'- cGGGUGGAC---GGGACgGACGcGCUGg -3'
miRNA:   3'- uCCCGCCUGuagUCCUGgUUGC-UGGC- -5'
9177 5' -57.3 NC_002512.2 + 113729 0.67 0.903451
Target:  5'- cGGGCGGcgAUCugcGGGCCGAgGugCGc -3'
miRNA:   3'- uCCCGCCugUAGu--CCUGGUUgCugGC- -5'
9177 5' -57.3 NC_002512.2 + 109861 0.67 0.903451
Target:  5'- cGuGGCGGcgGUgGGGACCuaccGCGACCa -3'
miRNA:   3'- uC-CCGCCugUAgUCCUGGu---UGCUGGc -5'
9177 5' -57.3 NC_002512.2 + 199450 0.67 0.903451
Target:  5'- uGGGCaGGCccgcguUCAGGGCCGcgACGACg- -3'
miRNA:   3'- uCCCGcCUGu-----AGUCCUGGU--UGCUGgc -5'
9177 5' -57.3 NC_002512.2 + 209346 0.67 0.897324
Target:  5'- gAGGuGUGGuACgagGUCGGcGACCuGGCGACCGu -3'
miRNA:   3'- -UCC-CGCC-UG---UAGUC-CUGG-UUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 124275 0.67 0.890985
Target:  5'- -cGGCGG-CGUC-GGACCcgGGCGugCGg -3'
miRNA:   3'- ucCCGCCuGUAGuCCUGG--UUGCugGC- -5'
9177 5' -57.3 NC_002512.2 + 228663 0.67 0.890985
Target:  5'- gAGaGGCGGGgAggaCGGGGCCGG-GGCCGc -3'
miRNA:   3'- -UC-CCGCCUgUa--GUCCUGGUUgCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 219856 0.67 0.890985
Target:  5'- gGGGGCGGAUcgC-GGACggguGACGagGCCGg -3'
miRNA:   3'- -UCCCGCCUGuaGuCCUGg---UUGC--UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.