miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9177 5' -57.3 NC_002512.2 + 110540 0.69 0.822608
Target:  5'- cGGGCGGAgAaggcccggagcaccUCGGcGGCCAucgagAUGACCGa -3'
miRNA:   3'- uCCCGCCUgU--------------AGUC-CUGGU-----UGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 111206 0.69 0.825056
Target:  5'- -cGGCGccGACGUCGGGACagacgaugacgGGCGGCCGg -3'
miRNA:   3'- ucCCGC--CUGUAGUCCUGg----------UUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 113269 0.68 0.856233
Target:  5'- gGGGGCGGcCggCGGGGCagccGCGGCgGg -3'
miRNA:   3'- -UCCCGCCuGuaGUCCUGgu--UGCUGgC- -5'
9177 5' -57.3 NC_002512.2 + 113497 0.74 0.524073
Target:  5'- cAGGGCgacccgccccggGGACcgCAGGGCCAGCauGACCc -3'
miRNA:   3'- -UCCCG------------CCUGuaGUCCUGGUUG--CUGGc -5'
9177 5' -57.3 NC_002512.2 + 113729 0.67 0.903451
Target:  5'- cGGGCGGcgAUCugcGGGCCGAgGugCGc -3'
miRNA:   3'- uCCCGCCugUAGu--CCUGGUUgCugGC- -5'
9177 5' -57.3 NC_002512.2 + 114182 0.76 0.459918
Target:  5'- cGGuGGCGccGGCGUCGGGcCCGGCGGCCa -3'
miRNA:   3'- -UC-CCGC--CUGUAGUCCuGGUUGCUGGc -5'
9177 5' -57.3 NC_002512.2 + 114227 0.68 0.863576
Target:  5'- -uGGCGGugAUguGGuCCucaucgacGGCGACCGg -3'
miRNA:   3'- ucCCGCCugUAguCCuGG--------UUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 116469 0.69 0.799958
Target:  5'- cGGGGCGGugAUC----CCGGCGGCCc -3'
miRNA:   3'- -UCCCGCCugUAGuccuGGUUGCUGGc -5'
9177 5' -57.3 NC_002512.2 + 118015 0.67 0.915059
Target:  5'- cGGGGUGGACccGUacgacgAGGACgCGGCGACgGc -3'
miRNA:   3'- -UCCCGCCUG--UAg-----UCCUG-GUUGCUGgC- -5'
9177 5' -57.3 NC_002512.2 + 118322 0.67 0.903451
Target:  5'- cGGGUGGAC---GGGACgGACGcGCUGg -3'
miRNA:   3'- uCCCGCCUGuagUCCUGgUUGC-UGGC- -5'
9177 5' -57.3 NC_002512.2 + 119565 0.74 0.524073
Target:  5'- cGGGCGGACcgCGGGAgcCCGGCGGguCCc -3'
miRNA:   3'- uCCCGCCUGuaGUCCU--GGUUGCU--GGc -5'
9177 5' -57.3 NC_002512.2 + 119999 0.71 0.708432
Target:  5'- gAGGGCaaGGACAgggaCAGGGCCAucuCGAUgGa -3'
miRNA:   3'- -UCCCG--CCUGUa---GUCCUGGUu--GCUGgC- -5'
9177 5' -57.3 NC_002512.2 + 120307 0.68 0.855488
Target:  5'- cAGGGCGGACAUCc--GCCGcuacugcACGGCgGa -3'
miRNA:   3'- -UCCCGCCUGUAGuccUGGU-------UGCUGgC- -5'
9177 5' -57.3 NC_002512.2 + 121171 0.66 0.930831
Target:  5'- cAGGGCGaGGCGUUcucGGACgaCGACGACa- -3'
miRNA:   3'- -UCCCGC-CUGUAGu--CCUG--GUUGCUGgc -5'
9177 5' -57.3 NC_002512.2 + 121374 0.7 0.773606
Target:  5'- gAGGGcCGGAgAggAGGG-CGACGGCCGg -3'
miRNA:   3'- -UCCC-GCCUgUagUCCUgGUUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 123539 0.72 0.650138
Target:  5'- aGGuGGCGaGCucgCGGGACgAGCGACCGg -3'
miRNA:   3'- -UC-CCGCcUGua-GUCCUGgUUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 124275 0.67 0.890985
Target:  5'- -cGGCGG-CGUC-GGACCcgGGCGugCGg -3'
miRNA:   3'- ucCCGCCuGUAGuCCUGG--UUGCugGC- -5'
9177 5' -57.3 NC_002512.2 + 127717 0.7 0.764579
Target:  5'- cAGGGCGGGgA--AGcGAUCGACGACCc -3'
miRNA:   3'- -UCCCGCCUgUagUC-CUGGUUGCUGGc -5'
9177 5' -57.3 NC_002512.2 + 128262 0.67 0.884436
Target:  5'- gAGcGGCGacucGCGUCccggcgccGGGCCGACGGCCGc -3'
miRNA:   3'- -UC-CCGCc---UGUAGu-------CCUGGUUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 128443 0.67 0.908782
Target:  5'- cGGGCGGcCAUggcccagCAGGAaCAGCGACa- -3'
miRNA:   3'- uCCCGCCuGUA-------GUCCUgGUUGCUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.