miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9177 5' -57.3 NC_002512.2 + 223685 0.67 0.884436
Target:  5'- aAGGGCGccgacaacGGCAUCGuccuGGCCGGCGACUc -3'
miRNA:   3'- -UCCCGC--------CUGUAGUc---CUGGUUGCUGGc -5'
9177 5' -57.3 NC_002512.2 + 174116 0.67 0.884436
Target:  5'- cGGGUGGACG--GGGAacgaCGACGacGCCGa -3'
miRNA:   3'- uCCCGCCUGUagUCCUg---GUUGC--UGGC- -5'
9177 5' -57.3 NC_002512.2 + 128262 0.67 0.884436
Target:  5'- gAGcGGCGacucGCGUCccggcgccGGGCCGACGGCCGc -3'
miRNA:   3'- -UC-CCGCc---UGUAGu-------CCUGGUUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 227618 0.67 0.884436
Target:  5'- gAGGGCGGGCggCGGcGGCgaggucaGGCGACgGa -3'
miRNA:   3'- -UCCCGCCUGuaGUC-CUGg------UUGCUGgC- -5'
9177 5' -57.3 NC_002512.2 + 129927 0.68 0.877683
Target:  5'- cGGGGCcaGGCcgAUCAGGcACCGGCGGCa- -3'
miRNA:   3'- -UCCCGc-CUG--UAGUCC-UGGUUGCUGgc -5'
9177 5' -57.3 NC_002512.2 + 157800 0.68 0.877683
Target:  5'- cGGGCGGuguGCAggUCgcugcgGGGGCCGgccGCGACCu -3'
miRNA:   3'- uCCCGCC---UGU--AG------UCCUGGU---UGCUGGc -5'
9177 5' -57.3 NC_002512.2 + 226376 0.68 0.877683
Target:  5'- cGGGCucgGGugG--AGGGCCGACGACgGc -3'
miRNA:   3'- uCCCG---CCugUagUCCUGGUUGCUGgC- -5'
9177 5' -57.3 NC_002512.2 + 191289 0.68 0.877683
Target:  5'- gAGGGCGG-CGgggCGGGGgaCGGgGGCCGg -3'
miRNA:   3'- -UCCCGCCuGUa--GUCCUg-GUUgCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 219278 0.68 0.877683
Target:  5'- gGGGGCGGACGcCGacGCCGugGcCCGc -3'
miRNA:   3'- -UCCCGCCUGUaGUccUGGUugCuGGC- -5'
9177 5' -57.3 NC_002512.2 + 150682 0.68 0.876996
Target:  5'- cGGGCGcGGCgGUCGccccgacGGACCGuuggcucucgGCGGCCGa -3'
miRNA:   3'- uCCCGC-CUG-UAGU-------CCUGGU----------UGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 33088 0.68 0.876996
Target:  5'- cGcGCGGuCAUCGGGACCAuaucucgcuguccGCGuCCGc -3'
miRNA:   3'- uCcCGCCuGUAGUCCUGGU-------------UGCuGGC- -5'
9177 5' -57.3 NC_002512.2 + 193914 0.68 0.870728
Target:  5'- -cGGCGGAUcgCGucccGGACUccgcuGACGGCCGg -3'
miRNA:   3'- ucCCGCCUGuaGU----CCUGG-----UUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 87835 0.68 0.870728
Target:  5'- cGGcCGGGCGUCGGGcCCucGCGGCgGg -3'
miRNA:   3'- uCCcGCCUGUAGUCCuGGu-UGCUGgC- -5'
9177 5' -57.3 NC_002512.2 + 209033 0.68 0.863576
Target:  5'- cGGGGCGGccGCGUCccGGAgcgauuCCGACGGCUc -3'
miRNA:   3'- -UCCCGCC--UGUAGu-CCU------GGUUGCUGGc -5'
9177 5' -57.3 NC_002512.2 + 168159 0.68 0.863576
Target:  5'- gGGGGCGGAgAg-GGGAC--GCGGCCc -3'
miRNA:   3'- -UCCCGCCUgUagUCCUGguUGCUGGc -5'
9177 5' -57.3 NC_002512.2 + 108501 0.68 0.863576
Target:  5'- aAGGGCGaGGC--CGGGcCCGGCGcCCGa -3'
miRNA:   3'- -UCCCGC-CUGuaGUCCuGGUUGCuGGC- -5'
9177 5' -57.3 NC_002512.2 + 114227 0.68 0.863576
Target:  5'- -uGGCGGugAUguGGuCCucaucgacGGCGACCGg -3'
miRNA:   3'- ucCCGCCugUAguCCuGG--------UUGCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 204720 0.68 0.856233
Target:  5'- -cGGCGGGCc-CGGGGCgGGgGGCCGg -3'
miRNA:   3'- ucCCGCCUGuaGUCCUGgUUgCUGGC- -5'
9177 5' -57.3 NC_002512.2 + 192024 0.68 0.856233
Target:  5'- -uGGCGGGCG-CGGGAgCGGCGGuCCu -3'
miRNA:   3'- ucCCGCCUGUaGUCCUgGUUGCU-GGc -5'
9177 5' -57.3 NC_002512.2 + 158854 0.68 0.856233
Target:  5'- cGGGgGGACGUCGucgucgaccGGCCGGCGGCgGc -3'
miRNA:   3'- uCCCgCCUGUAGUc--------CUGGUUGCUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.