miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9178 3' -61.1 NC_002512.2 + 119973 0.67 0.738295
Target:  5'- uGGGGCCgaaCGCGCGCGacGCCGaCgaggGCAa -3'
miRNA:   3'- uCCCCGGug-GUGUGUGC--CGGC-Ga---UGU- -5'
9178 3' -61.1 NC_002512.2 + 147567 0.67 0.738295
Target:  5'- cGGGGCgGCC---CGCGGCCcuCUACAc -3'
miRNA:   3'- uCCCCGgUGGuguGUGCCGGc-GAUGU- -5'
9178 3' -61.1 NC_002512.2 + 160904 0.67 0.738295
Target:  5'- cGGGGCgGCCggggcaagggacGCGgACaGUCGCUGCGg -3'
miRNA:   3'- uCCCCGgUGG------------UGUgUGcCGGCGAUGU- -5'
9178 3' -61.1 NC_002512.2 + 104747 0.67 0.729007
Target:  5'- cGGGGCCcCCGCGguuCACGcG-UGCUGCAu -3'
miRNA:   3'- uCCCCGGuGGUGU---GUGC-CgGCGAUGU- -5'
9178 3' -61.1 NC_002512.2 + 162091 0.67 0.719644
Target:  5'- uGGGGGUgACCGCugA-GGCCaGCU-CAc -3'
miRNA:   3'- -UCCCCGgUGGUGugUgCCGG-CGAuGU- -5'
9178 3' -61.1 NC_002512.2 + 37741 0.67 0.719644
Target:  5'- aAGGcGGUCACgACG-ACGGCCGCa--- -3'
miRNA:   3'- -UCC-CCGGUGgUGUgUGCCGGCGaugu -5'
9178 3' -61.1 NC_002512.2 + 133879 0.67 0.719644
Target:  5'- cGGGGCguuCCGcCugGCGGUCGCgGCGc -3'
miRNA:   3'- uCCCCGgu-GGU-GugUGCCGGCGaUGU- -5'
9178 3' -61.1 NC_002512.2 + 211798 0.67 0.719644
Target:  5'- cGGGGGCCGucCCGC-CGCGG-CGCa--- -3'
miRNA:   3'- -UCCCCGGU--GGUGuGUGCCgGCGaugu -5'
9178 3' -61.1 NC_002512.2 + 223275 0.67 0.719644
Target:  5'- gGGGGGCgggaCGCCGCGCGCa---GCUACAu -3'
miRNA:   3'- -UCCCCG----GUGGUGUGUGccggCGAUGU- -5'
9178 3' -61.1 NC_002512.2 + 226807 0.67 0.719644
Target:  5'- --cGGCCGCCGC-CGUGGCCGCcGCc -3'
miRNA:   3'- uccCCGGUGGUGuGUGCCGGCGaUGu -5'
9178 3' -61.1 NC_002512.2 + 217111 0.67 0.710214
Target:  5'- gGGGGcGCCGCCGaguccuGCGGCgGCaGCAg -3'
miRNA:   3'- -UCCC-CGGUGGUgug---UGCCGgCGaUGU- -5'
9178 3' -61.1 NC_002512.2 + 174336 0.67 0.710214
Target:  5'- cGGGGGuCCGCCGCGCccuCGuCCGCcgggaUGCGg -3'
miRNA:   3'- -UCCCC-GGUGGUGUGu--GCcGGCG-----AUGU- -5'
9178 3' -61.1 NC_002512.2 + 213358 0.67 0.710214
Target:  5'- aGGGGGaCGCC-CGCGCuGGCgGCgACAg -3'
miRNA:   3'- -UCCCCgGUGGuGUGUG-CCGgCGaUGU- -5'
9178 3' -61.1 NC_002512.2 + 222498 0.67 0.700724
Target:  5'- cGGuGGCCGCCuucuGCGCcUGGCCGCc--- -3'
miRNA:   3'- uCC-CCGGUGG----UGUGuGCCGGCGaugu -5'
9178 3' -61.1 NC_002512.2 + 218993 0.67 0.700724
Target:  5'- cGGGGUCcgcaACCGCcuccuccaGCACuGCUGCUGCGa -3'
miRNA:   3'- uCCCCGG----UGGUG--------UGUGcCGGCGAUGU- -5'
9178 3' -61.1 NC_002512.2 + 188799 0.67 0.700724
Target:  5'- cGGcGGCC-CCGauCGCGGCgGCUACu -3'
miRNA:   3'- uCC-CCGGuGGUguGUGCCGgCGAUGu -5'
9178 3' -61.1 NC_002512.2 + 221163 0.67 0.691183
Target:  5'- -cGGGCgGgCGCGCGCGGCCGaccgACc -3'
miRNA:   3'- ucCCCGgUgGUGUGUGCCGGCga--UGu -5'
9178 3' -61.1 NC_002512.2 + 149247 0.67 0.691183
Target:  5'- cGGcgccGCCGCCGCGgACGGCCGg-ACGg -3'
miRNA:   3'- uCCc---CGGUGGUGUgUGCCGGCgaUGU- -5'
9178 3' -61.1 NC_002512.2 + 129927 0.67 0.691183
Target:  5'- cGGGGCCagGCCgaucagGCAC-CGGCgGCaGCAg -3'
miRNA:   3'- uCCCCGG--UGG------UGUGuGCCGgCGaUGU- -5'
9178 3' -61.1 NC_002512.2 + 293 0.67 0.690226
Target:  5'- gGGGGGCCAgggcagcCCACGCccucCGGCCuccuCUGCc -3'
miRNA:   3'- -UCCCCGGU-------GGUGUGu---GCCGGc---GAUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.