Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 9178 | 5' | -57.9 | NC_002512.2 | + | 198664 | 0.72 | 0.531558 |
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Target: 5'- aACGCAGCAGCgUGGCGAcggggGGCC-CGa -3' miRNA: 3'- cUGUGUCGUCG-ACCGUUa----CCGGcGCa -5' |
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| 9178 | 5' | -57.9 | NC_002512.2 | + | 175264 | 0.73 | 0.521906 |
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Target: 5'- cGCGCucggcgGGUAGCUGGC---GGCCGCGUa -3' miRNA: 3'- cUGUG------UCGUCGACCGuuaCCGGCGCA- -5' |
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| 9178 | 5' | -57.9 | NC_002512.2 | + | 182615 | 0.74 | 0.447522 |
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Target: 5'- -cCGCAGCGGCU--CGGUGGCCGCGc -3' miRNA: 3'- cuGUGUCGUCGAccGUUACCGGCGCa -5' |
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| 9178 | 5' | -57.9 | NC_002512.2 | + | 156503 | 0.75 | 0.395775 |
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Target: 5'- gGACACGGCGGCcugGGCGGcgGGgCGCGg -3' miRNA: 3'- -CUGUGUCGUCGa--CCGUUa-CCgGCGCa -5' |
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| 9178 | 5' | -57.9 | NC_002512.2 | + | 179233 | 0.8 | 0.214406 |
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Target: 5'- uGCGcCAGCAGCUGGCg--GGCCGUGUc -3' miRNA: 3'- cUGU-GUCGUCGACCGuuaCCGGCGCA- -5' |
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| 9178 | 5' | -57.9 | NC_002512.2 | + | 34371 | 1.06 | 0.003718 |
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Target: 5'- uGACACAGCAGCUGGCAAUGGCCGCGUu -3' miRNA: 3'- -CUGUGUCGUCGACCGUUACCGGCGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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