miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9179 3' -53.3 NC_002512.2 + 150710 0.72 0.843646
Target:  5'- uUGGCucucgGCGGCCGAccGUUGG-ACuUCCCg -3'
miRNA:   3'- gGCCG-----CGCCGGUU--UAACCuUGuAGGG- -5'
9179 3' -53.3 NC_002512.2 + 172649 0.72 0.843646
Target:  5'- gCGGUaGCGGCCugcg-GGGACG-CCCg -3'
miRNA:   3'- gGCCG-CGCCGGuuuaaCCUUGUaGGG- -5'
9179 3' -53.3 NC_002512.2 + 7934 0.72 0.843646
Target:  5'- uCCGGUuucguuGCGGCCGGGc-GGAugAUCUCg -3'
miRNA:   3'- -GGCCG------CGCCGGUUUaaCCUugUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 190213 0.72 0.843646
Target:  5'- gCGGCGCGGUCGucc-GGGACggCCa -3'
miRNA:   3'- gGCCGCGCCGGUuuaaCCUUGuaGGg -5'
9179 3' -53.3 NC_002512.2 + 206444 0.72 0.85607
Target:  5'- aCGGCGCGGUgAAGUagucgcugcgcacGGccAGCGUCCCg -3'
miRNA:   3'- gGCCGCGCCGgUUUAa------------CC--UUGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 137666 0.72 0.859099
Target:  5'- aCCGG-GCGGCCAuauc-GGugAUCCCc -3'
miRNA:   3'- -GGCCgCGCCGGUuuaacCUugUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 164985 0.72 0.859099
Target:  5'- cCCGGCcucgacaucGCGGCCGAc--GGAGaggcCGUCCCc -3'
miRNA:   3'- -GGCCG---------CGCCGGUUuaaCCUU----GUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 222218 0.72 0.866533
Target:  5'- gUCGGgGUGGCCGucg-GGGccGCGUCCUu -3'
miRNA:   3'- -GGCCgCGCCGGUuuaaCCU--UGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 184391 0.72 0.866533
Target:  5'- uUCGGCGUGGCCGccgccggGGGGCG-CUCg -3'
miRNA:   3'- -GGCCGCGCCGGUuuaa---CCUUGUaGGG- -5'
9179 3' -53.3 NC_002512.2 + 77699 0.72 0.873763
Target:  5'- uCCGGaCGCGGUCAAGUgaacGAgacGCcgCCCa -3'
miRNA:   3'- -GGCC-GCGCCGGUUUAac--CU---UGuaGGG- -5'
9179 3' -53.3 NC_002512.2 + 33736 0.72 0.880786
Target:  5'- uCCGGaCGcCGGUgAAAUUGGAAgAUgaaCCCa -3'
miRNA:   3'- -GGCC-GC-GCCGgUUUAACCUUgUA---GGG- -5'
9179 3' -53.3 NC_002512.2 + 107007 0.71 0.887596
Target:  5'- gCCGGgGuCGGCCGAGagccgGGcGCGcUCCCg -3'
miRNA:   3'- -GGCCgC-GCCGGUUUaa---CCuUGU-AGGG- -5'
9179 3' -53.3 NC_002512.2 + 157087 0.71 0.887596
Target:  5'- gCCGGCGCccacggcgGGCCcgucccGGcGACGUCCCu -3'
miRNA:   3'- -GGCCGCG--------CCGGuuuaa-CC-UUGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 178248 0.71 0.900563
Target:  5'- aCGGCGCGGUCuccg-GGucCGUCgCCa -3'
miRNA:   3'- gGCCGCGCCGGuuuaaCCuuGUAG-GG- -5'
9179 3' -53.3 NC_002512.2 + 143351 0.71 0.906713
Target:  5'- gCCGGaccaGgGGUCAGA-UGGGGCcUCCCc -3'
miRNA:   3'- -GGCCg---CgCCGGUUUaACCUUGuAGGG- -5'
9179 3' -53.3 NC_002512.2 + 151670 0.71 0.912637
Target:  5'- aCCGGcCGUGGCCGGuucuagacauUUGGGGgAgCCCa -3'
miRNA:   3'- -GGCC-GCGCCGGUUu---------AACCUUgUaGGG- -5'
9179 3' -53.3 NC_002512.2 + 137910 0.7 0.918333
Target:  5'- cCCGGaCGCGGCCcucc--GGACGUgCCg -3'
miRNA:   3'- -GGCC-GCGCCGGuuuaacCUUGUAgGG- -5'
9179 3' -53.3 NC_002512.2 + 92580 0.7 0.918333
Target:  5'- aCGcCGCGGCCGGGagGGGcgGCgGUCCCg -3'
miRNA:   3'- gGCcGCGCCGGUUUaaCCU--UG-UAGGG- -5'
9179 3' -53.3 NC_002512.2 + 152916 0.7 0.918333
Target:  5'- cCCGGU-CGGUCAGcg-GGAGCgGUCCCc -3'
miRNA:   3'- -GGCCGcGCCGGUUuaaCCUUG-UAGGG- -5'
9179 3' -53.3 NC_002512.2 + 189667 0.7 0.918333
Target:  5'- aCCGGCGuCGGCCcuAcUGGuaccGGCggCCCu -3'
miRNA:   3'- -GGCCGC-GCCGGuuUaACC----UUGuaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.