miRNA display CGI


Results 41 - 60 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9179 3' -53.3 NC_002512.2 + 160903 0.67 0.986741
Target:  5'- gCGGgGCGGCCGGGgcaaGGGACGc--- -3'
miRNA:   3'- gGCCgCGCCGGUUUaa--CCUUGUaggg -5'
9179 3' -53.3 NC_002512.2 + 130826 0.67 0.986741
Target:  5'- uCCGGUGaCGGCgcuGUUG-AAgAUCCCg -3'
miRNA:   3'- -GGCCGC-GCCGguuUAACcUUgUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 177283 0.67 0.986741
Target:  5'- -gGGaCuuGGCCAGGUUGGcguugAACGUCCUc -3'
miRNA:   3'- ggCC-GcgCCGGUUUAACC-----UUGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 127289 0.67 0.986584
Target:  5'- uUGGCgGCGGCCGAcgaggaggagagGaUGGAgaccaggGCGUCCUu -3'
miRNA:   3'- gGCCG-CGCCGGUU------------UaACCU-------UGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 114032 0.67 0.985105
Target:  5'- aCCgGGCGCGGUgGAcgUaGaGGGCGggCCCg -3'
miRNA:   3'- -GG-CCGCGCCGgUUuaA-C-CUUGUa-GGG- -5'
9179 3' -53.3 NC_002512.2 + 121350 0.67 0.985105
Target:  5'- gCGGCGgGGCC--GUUGGAcgGCGgagagggCCg -3'
miRNA:   3'- gGCCGCgCCGGuuUAACCU--UGUa------GGg -5'
9179 3' -53.3 NC_002512.2 + 165144 0.67 0.985105
Target:  5'- uUCGGCGCuaCCGcGUUGGGGacgCCCg -3'
miRNA:   3'- -GGCCGCGccGGUuUAACCUUguaGGG- -5'
9179 3' -53.3 NC_002512.2 + 156417 0.67 0.984586
Target:  5'- cCCGGaucggcaugcugucCGCGGCCGGGcuggGGGGC-UCCg -3'
miRNA:   3'- -GGCC--------------GCGCCGGUUUaa--CCUUGuAGGg -5'
9179 3' -53.3 NC_002512.2 + 150747 0.67 0.984052
Target:  5'- cCCGcGCGCGGCCcagacccguGAUUGacggccGAcucggcggugacgucACGUCCCa -3'
miRNA:   3'- -GGC-CGCGCCGGu--------UUAAC------CU---------------UGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 193441 0.67 0.98332
Target:  5'- gCGacCGCGGCCGccGGUggcgGGAGCGggCCCu -3'
miRNA:   3'- gGCc-GCGCCGGU--UUAa---CCUUGUa-GGG- -5'
9179 3' -53.3 NC_002512.2 + 147048 0.67 0.98332
Target:  5'- cCUGcGCGCGGaCCGGGgcgGGAACGUgUg -3'
miRNA:   3'- -GGC-CGCGCC-GGUUUaa-CCUUGUAgGg -5'
9179 3' -53.3 NC_002512.2 + 102908 0.67 0.98332
Target:  5'- cCUGGCGCGGUCGAc--GGccACGggcCCCa -3'
miRNA:   3'- -GGCCGCGCCGGUUuaaCCu-UGUa--GGG- -5'
9179 3' -53.3 NC_002512.2 + 214413 0.67 0.98332
Target:  5'- gCCGGaGCGcGCCGcgcccgaGGAccGCGUCCCc -3'
miRNA:   3'- -GGCCgCGC-CGGUuuaa---CCU--UGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 97766 0.67 0.982754
Target:  5'- aCCGGCGCuaccgggcgcugccGGCCGAGacGGAcgagACcgCUCg -3'
miRNA:   3'- -GGCCGCG--------------CCGGUUUaaCCU----UGuaGGG- -5'
9179 3' -53.3 NC_002512.2 + 131206 0.67 0.981377
Target:  5'- gUCGuGCGCGGCCAGGcgcucGACGUCgCg -3'
miRNA:   3'- -GGC-CGCGCCGGUUUaacc-UUGUAGgG- -5'
9179 3' -53.3 NC_002512.2 + 121158 0.67 0.981377
Target:  5'- gCCGGcCGCGGCCcag--GGcgaGGCGUUCUc -3'
miRNA:   3'- -GGCC-GCGCCGGuuuaaCC---UUGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 223912 0.67 0.981174
Target:  5'- gCGGCGCGggcgagaggucgaGCCGGAcgGGGAgGucgaUCCCu -3'
miRNA:   3'- gGCCGCGC-------------CGGUUUaaCCUUgU----AGGG- -5'
9179 3' -53.3 NC_002512.2 + 187199 0.67 0.979269
Target:  5'- gCCGGCGCcGCgGGAUUGGGG-AUCg- -3'
miRNA:   3'- -GGCCGCGcCGgUUUAACCUUgUAGgg -5'
9179 3' -53.3 NC_002512.2 + 54173 0.67 0.979269
Target:  5'- aCGaGCGgGGUCAGcccGGGuccACGUCCCg -3'
miRNA:   3'- gGC-CGCgCCGGUUuaaCCU---UGUAGGG- -5'
9179 3' -53.3 NC_002512.2 + 54367 0.67 0.979269
Target:  5'- aCGaGCGgGGUCAGcccGGGuccACGUCCCg -3'
miRNA:   3'- gGC-CGCgCCGGUUuaaCCU---UGUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.