miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9180 3' -52.4 NC_002512.2 + 194268 0.66 0.990118
Target:  5'- gGCCGcCGAGgAGUggaaGAUggCGGC-CAGCg -3'
miRNA:   3'- -CGGCaGCUCgUCG----UUAa-GCCGuGUUG- -5'
9180 3' -52.4 NC_002512.2 + 179308 0.66 0.98999
Target:  5'- uCCG-CGGGCGGCGAggCgGGCagauccuGCAGCg -3'
miRNA:   3'- cGGCaGCUCGUCGUUaaG-CCG-------UGUUG- -5'
9180 3' -52.4 NC_002512.2 + 100509 0.67 0.988207
Target:  5'- gGUCGUCGAGCAcccGCAcgagacagaaGGCgACGACg -3'
miRNA:   3'- -CGGCAGCUCGU---CGUuaag------CCG-UGUUG- -5'
9180 3' -52.4 NC_002512.2 + 100376 0.67 0.988207
Target:  5'- aGCUGcCGAGuCAGCAGgagcgagcuccagUUGGCgACGGCg -3'
miRNA:   3'- -CGGCaGCUC-GUCGUUa------------AGCCG-UGUUG- -5'
9180 3' -52.4 NC_002512.2 + 98475 0.67 0.987306
Target:  5'- -aCGUUGAGCAcGCAGUUCaccgcaucccgGGUgaACAGCg -3'
miRNA:   3'- cgGCAGCUCGU-CGUUAAG-----------CCG--UGUUG- -5'
9180 3' -52.4 NC_002512.2 + 113879 0.67 0.987306
Target:  5'- aGCgGUcCGAGCgaaAGCGGUUgcaGGCGCAGa -3'
miRNA:   3'- -CGgCA-GCUCG---UCGUUAAg--CCGUGUUg -5'
9180 3' -52.4 NC_002512.2 + 134164 0.67 0.987306
Target:  5'- cCCGUCGAcccggacccugGCGGCGuucUUCGGCGacguGCg -3'
miRNA:   3'- cGGCAGCU-----------CGUCGUu--AAGCCGUgu--UG- -5'
9180 3' -52.4 NC_002512.2 + 92587 0.67 0.985687
Target:  5'- gGCCGggagGGGCGGCGGUcccgaggcCGGuCGCGACg -3'
miRNA:   3'- -CGGCag--CUCGUCGUUAa-------GCC-GUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 111253 0.67 0.985687
Target:  5'- -gCGUCGGGCGGCAcg-CGG-ACGAg -3'
miRNA:   3'- cgGCAGCUCGUCGUuaaGCCgUGUUg -5'
9180 3' -52.4 NC_002512.2 + 223000 0.67 0.985687
Target:  5'- uGCCGggGAGCGGCA---CGGCcCAGg -3'
miRNA:   3'- -CGGCagCUCGUCGUuaaGCCGuGUUg -5'
9180 3' -52.4 NC_002512.2 + 226694 0.67 0.985687
Target:  5'- gGCCGUCGcccGCGGCGGcgUCGa-GCGACg -3'
miRNA:   3'- -CGGCAGCu--CGUCGUUa-AGCcgUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 224001 0.67 0.983914
Target:  5'- cGCCGUccaCGAGCGaCGAgUCGG-ACGACg -3'
miRNA:   3'- -CGGCA---GCUCGUcGUUaAGCCgUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 120504 0.67 0.983914
Target:  5'- cGCCGcCGAucGCGGUGAcggggaGGCGCGGCu -3'
miRNA:   3'- -CGGCaGCU--CGUCGUUaag---CCGUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 158462 0.67 0.983914
Target:  5'- cGgCGUCGAGC-GCAGccUCaGCACGAUc -3'
miRNA:   3'- -CgGCAGCUCGuCGUUa-AGcCGUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 158967 0.67 0.983914
Target:  5'- gGCgG-CGAGCGGUucggCGGcCACGGCg -3'
miRNA:   3'- -CGgCaGCUCGUCGuuaaGCC-GUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 171529 0.67 0.983914
Target:  5'- -aCGUCGAGC-GCAucaagcccuGUUCG-CACGGCg -3'
miRNA:   3'- cgGCAGCUCGuCGU---------UAAGCcGUGUUG- -5'
9180 3' -52.4 NC_002512.2 + 201348 0.67 0.98198
Target:  5'- gGCCGacaUCGGGCGGCGg--CGGacccgACAGCu -3'
miRNA:   3'- -CGGC---AGCUCGUCGUuaaGCCg----UGUUG- -5'
9180 3' -52.4 NC_002512.2 + 128247 0.67 0.98198
Target:  5'- cGCCGcgcuccccUCGAGCGGCGAcucgcguccCGGCGCcgGGCc -3'
miRNA:   3'- -CGGC--------AGCUCGUCGUUaa-------GCCGUG--UUG- -5'
9180 3' -52.4 NC_002512.2 + 112153 0.67 0.98198
Target:  5'- gGCgGUCGA-CGGCGAgcCGGCGCu-- -3'
miRNA:   3'- -CGgCAGCUcGUCGUUaaGCCGUGuug -5'
9180 3' -52.4 NC_002512.2 + 94632 0.67 0.98198
Target:  5'- cUCGUCGAGC-GCGGcgCGG-ACGACg -3'
miRNA:   3'- cGGCAGCUCGuCGUUaaGCCgUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.