miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9180 5' -54 NC_002512.2 + 91106 0.66 0.987009
Target:  5'- aGGACGggcccGUGGCGCUGgagcaguucgagaugUGGUCG-GACg -3'
miRNA:   3'- -UCUGCa----CACUGCGGCa--------------ACCAGCgUUG- -5'
9180 5' -54 NC_002512.2 + 211774 0.66 0.986854
Target:  5'- aGGACGUGgaggcccggGugGCCGcgGGggccgucccgcCGCGGCg -3'
miRNA:   3'- -UCUGCACa--------CugCGGCaaCCa----------GCGUUG- -5'
9180 5' -54 NC_002512.2 + 174709 0.66 0.986854
Target:  5'- -cGCGUG-GAUGCCGUaGGUCauggGCAcgGCg -3'
miRNA:   3'- ucUGCACaCUGCGGCAaCCAG----CGU--UG- -5'
9180 5' -54 NC_002512.2 + 120192 0.66 0.986854
Target:  5'- uGuCG-GUGACGCCGggGGU-GCAc- -3'
miRNA:   3'- uCuGCaCACUGCGGCaaCCAgCGUug -5'
9180 5' -54 NC_002512.2 + 181952 0.66 0.985221
Target:  5'- cGGGC-UGUGACGgUGUaUGGacCGCAACg -3'
miRNA:   3'- -UCUGcACACUGCgGCA-ACCa-GCGUUG- -5'
9180 5' -54 NC_002512.2 + 219868 0.66 0.981497
Target:  5'- cGGACGgGUGACgagGCCGg-GGUCGgaGACg -3'
miRNA:   3'- -UCUGCaCACUG---CGGCaaCCAGCg-UUG- -5'
9180 5' -54 NC_002512.2 + 133880 0.66 0.97939
Target:  5'- gGGGCGUuc--CGCCuGgcGGUCGCGGCg -3'
miRNA:   3'- -UCUGCAcacuGCGG-CaaCCAGCGUUG- -5'
9180 5' -54 NC_002512.2 + 200752 0.66 0.97939
Target:  5'- cGGGCGUG-GuCGUCGUacauggUGGUCGCc-- -3'
miRNA:   3'- -UCUGCACaCuGCGGCA------ACCAGCGuug -5'
9180 5' -54 NC_002512.2 + 158933 0.67 0.97465
Target:  5'- cGGCGgg-GGCGCCGgcggccucucGGUCaGCAACg -3'
miRNA:   3'- uCUGCacaCUGCGGCaa--------CCAG-CGUUG- -5'
9180 5' -54 NC_002512.2 + 128821 0.67 0.969162
Target:  5'- cGGCG-GcGGCGCUGUcGG-CGCAGCu -3'
miRNA:   3'- uCUGCaCaCUGCGGCAaCCaGCGUUG- -5'
9180 5' -54 NC_002512.2 + 204067 0.67 0.969162
Target:  5'- cGACGUG-GACGUCGUcGG-CGgGAUg -3'
miRNA:   3'- uCUGCACaCUGCGGCAaCCaGCgUUG- -5'
9180 5' -54 NC_002512.2 + 226780 0.67 0.969162
Target:  5'- aGGACGUcucGggcGACGCCG-UGGUCuCGGCc -3'
miRNA:   3'- -UCUGCA---Ca--CUGCGGCaACCAGcGUUG- -5'
9180 5' -54 NC_002512.2 + 107331 0.67 0.962875
Target:  5'- uGACG-GUGGCGUCGUacuUGGUgaCGCGcGCg -3'
miRNA:   3'- uCUGCaCACUGCGGCA---ACCA--GCGU-UG- -5'
9180 5' -54 NC_002512.2 + 157115 0.68 0.959419
Target:  5'- cGACGUcccucccGGCGUCGggGGUCgGCGGCg -3'
miRNA:   3'- uCUGCAca-----CUGCGGCaaCCAG-CGUUG- -5'
9180 5' -54 NC_002512.2 + 115360 0.68 0.959419
Target:  5'- cGGCGUGaaGACGCCGgc-GUCGUAcgGCa -3'
miRNA:   3'- uCUGCACa-CUGCGGCaacCAGCGU--UG- -5'
9180 5' -54 NC_002512.2 + 219029 0.69 0.934038
Target:  5'- cGACGUGcUGgucuACGUCGUcGGcCGCGGCg -3'
miRNA:   3'- uCUGCAC-AC----UGCGGCAaCCaGCGUUG- -5'
9180 5' -54 NC_002512.2 + 96814 0.69 0.923748
Target:  5'- aAGACGUG-GACGCUGUcgauccuaUGcugCGCGGCg -3'
miRNA:   3'- -UCUGCACaCUGCGGCA--------ACca-GCGUUG- -5'
9180 5' -54 NC_002512.2 + 202156 0.7 0.893988
Target:  5'- gGGGCGg--GugGUCGUucccgUGGUCGUGACg -3'
miRNA:   3'- -UCUGCacaCugCGGCA-----ACCAGCGUUG- -5'
9180 5' -54 NC_002512.2 + 116115 0.7 0.880511
Target:  5'- aGGACGagugcaaucgcUGUGcACGCCGcguaucgUGGUCgGCAACa -3'
miRNA:   3'- -UCUGC-----------ACAC-UGCGGCa------ACCAG-CGUUG- -5'
9180 5' -54 NC_002512.2 + 161685 0.71 0.851027
Target:  5'- uGGACGUGUGGCGCgUGgaagaUGGagaCGCGGCc -3'
miRNA:   3'- -UCUGCACACUGCG-GCa----ACCa--GCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.