miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9181 3' -49.2 NC_002512.2 + 21747 1.14 0.00946
Target:  5'- cGUGUUACCACGGCUAUGCCGAUAACCg -3'
miRNA:   3'- -CACAAUGGUGCCGAUACGGCUAUUGG- -5'
9181 3' -49.2 NC_002512.2 + 194725 0.73 0.94744
Target:  5'- -gGggGgCGCGGCUgGUGCCGAUcuCCa -3'
miRNA:   3'- caCaaUgGUGCCGA-UACGGCUAuuGG- -5'
9181 3' -49.2 NC_002512.2 + 156140 0.73 0.959553
Target:  5'- -cGcUACCACGGCUA---CGGUAGCCa -3'
miRNA:   3'- caCaAUGGUGCCGAUacgGCUAUUGG- -5'
9181 3' -49.2 NC_002512.2 + 219122 0.72 0.963123
Target:  5'- ---cUACCGCGGCgggGCCGAcGACg -3'
miRNA:   3'- cacaAUGGUGCCGauaCGGCUaUUGg -5'
9181 3' -49.2 NC_002512.2 + 93504 0.72 0.969591
Target:  5'- cUGUcgGCCAUGGCgugcGUGUCGcUGGCCa -3'
miRNA:   3'- cACAa-UGGUGCCGa---UACGGCuAUUGG- -5'
9181 3' -49.2 NC_002512.2 + 48593 0.72 0.972502
Target:  5'- -aGUUGCaCcCGGauuUGCCGAUGGCCu -3'
miRNA:   3'- caCAAUG-GuGCCgauACGGCUAUUGG- -5'
9181 3' -49.2 NC_002512.2 + 193440 0.71 0.980024
Target:  5'- -cGcgACCGCGGCc--GCCGGUGGCg -3'
miRNA:   3'- caCaaUGGUGCCGauaCGGCUAUUGg -5'
9181 3' -49.2 NC_002512.2 + 222407 0.71 0.980024
Target:  5'- ----cGCCGCGGCUucggcggggGCCGGcAGCCg -3'
miRNA:   3'- cacaaUGGUGCCGAua-------CGGCUaUUGG- -5'
9181 3' -49.2 NC_002512.2 + 95896 0.7 0.990344
Target:  5'- -gGUcGCC-CGGCcggGUGCCGAcgagGACCu -3'
miRNA:   3'- caCAaUGGuGCCGa--UACGGCUa---UUGG- -5'
9181 3' -49.2 NC_002512.2 + 217625 0.69 0.994474
Target:  5'- -cGgcGCCACGGgUcucgugcugAUGCgGAUGGCCu -3'
miRNA:   3'- caCaaUGGUGCCgA---------UACGgCUAUUGG- -5'
9181 3' -49.2 NC_002512.2 + 141137 0.68 0.997043
Target:  5'- ----cACCAcCGGCUcgGCCGGgguCCu -3'
miRNA:   3'- cacaaUGGU-GCCGAuaCGGCUauuGG- -5'
9181 3' -49.2 NC_002512.2 + 218223 0.68 0.9975
Target:  5'- ----gGCCGCGGCgg-GCCGcgGcGCCg -3'
miRNA:   3'- cacaaUGGUGCCGauaCGGCuaU-UGG- -5'
9181 3' -49.2 NC_002512.2 + 42899 0.68 0.997896
Target:  5'- gGUGUauaCGCuGCUcugGCCGAUGGCCu -3'
miRNA:   3'- -CACAaugGUGcCGAua-CGGCUAUUGG- -5'
9181 3' -49.2 NC_002512.2 + 202288 0.68 0.998174
Target:  5'- uGUGggACCGgGGCgccGUGCCGccgcgcuuuugGGCCg -3'
miRNA:   3'- -CACaaUGGUgCCGa--UACGGCua---------UUGG- -5'
9181 3' -49.2 NC_002512.2 + 124321 0.68 0.998238
Target:  5'- -cGggGCCGCGGCggacGUGCUGcgGcuguACCu -3'
miRNA:   3'- caCaaUGGUGCCGa---UACGGCuaU----UGG- -5'
9181 3' -49.2 NC_002512.2 + 76116 0.68 0.998238
Target:  5'- -gGgcGCCGgGGUgGUGUCGAUGACg -3'
miRNA:   3'- caCaaUGGUgCCGaUACGGCUAUUGg -5'
9181 3' -49.2 NC_002512.2 + 102557 0.67 0.998784
Target:  5'- -cGU--CCGCGGC---GUCGAUGGCCg -3'
miRNA:   3'- caCAauGGUGCCGauaCGGCUAUUGG- -5'
9181 3' -49.2 NC_002512.2 + 158660 0.67 0.999179
Target:  5'- -cGUcgagGCCACGGUcAUcGCCGGaucaUGGCCg -3'
miRNA:   3'- caCAa---UGGUGCCGaUA-CGGCU----AUUGG- -5'
9181 3' -49.2 NC_002512.2 + 228577 0.67 0.999331
Target:  5'- --cUUACCGCGGUcGUGUCGGcGGCa -3'
miRNA:   3'- cacAAUGGUGCCGaUACGGCUaUUGg -5'
9181 3' -49.2 NC_002512.2 + 203116 0.67 0.999331
Target:  5'- ----gGCCAgGGCgUcgGCCGAgucgugGGCCa -3'
miRNA:   3'- cacaaUGGUgCCG-AuaCGGCUa-----UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.