miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9181 5' -43.1 NC_002512.2 + 7936 0.66 1
Target:  5'- -cGGUUUCGuuGCGGCCGgg---CGGAUg -3'
miRNA:   3'- gaCCAAAGC--UGCUGGUaauaaGUUUG- -5'
9181 5' -43.1 NC_002512.2 + 166344 0.68 1
Target:  5'- -gGGUcaucUUCGACGGCCAg----CAGAUc -3'
miRNA:   3'- gaCCA----AAGCUGCUGGUaauaaGUUUG- -5'
9181 5' -43.1 NC_002512.2 + 217890 0.67 1
Target:  5'- -----aUCGGCGGCCGcgUcgUCGAGCg -3'
miRNA:   3'- gaccaaAGCUGCUGGUa-AuaAGUUUG- -5'
9181 5' -43.1 NC_002512.2 + 24627 0.67 1
Target:  5'- -cGGUccuugucuucuaUUCGAUGACCGUUGgagGAACu -3'
miRNA:   3'- gaCCA------------AAGCUGCUGGUAAUaagUUUG- -5'
9181 5' -43.1 NC_002512.2 + 97495 0.67 1
Target:  5'- aUGGUgUUCG-CGGCCAUggcggUGUUCGGGa -3'
miRNA:   3'- gACCA-AAGCuGCUGGUA-----AUAAGUUUg -5'
9181 5' -43.1 NC_002512.2 + 103606 0.67 1
Target:  5'- -cGGUgUCGACGGCCucccggUAccgcuggaggucggcUUCGGACa -3'
miRNA:   3'- gaCCAaAGCUGCUGGua----AU---------------AAGUUUG- -5'
9181 5' -43.1 NC_002512.2 + 100982 0.66 1
Target:  5'- -cGGgaaaGGCGACCAcgUUGUgucgCAGACa -3'
miRNA:   3'- gaCCaaagCUGCUGGU--AAUAa---GUUUG- -5'
9181 5' -43.1 NC_002512.2 + 167755 0.66 1
Target:  5'- -cGGgcgUCGGCGACCGga--UCGAGu -3'
miRNA:   3'- gaCCaa-AGCUGCUGGUaauaAGUUUg -5'
9181 5' -43.1 NC_002512.2 + 89898 0.7 0.999998
Target:  5'- uCUGGg-UCGGCGACCccacg-CAGACg -3'
miRNA:   3'- -GACCaaAGCUGCUGGuaauaaGUUUG- -5'
9181 5' -43.1 NC_002512.2 + 146197 0.74 0.999442
Target:  5'- cCUGGgcUCGACGACCG----UCAAGa -3'
miRNA:   3'- -GACCaaAGCUGCUGGUaauaAGUUUg -5'
9181 5' -43.1 NC_002512.2 + 140631 0.74 0.999305
Target:  5'- aUGGUaUCGGCGACgGUgaucUCGAACg -3'
miRNA:   3'- gACCAaAGCUGCUGgUAaua-AGUUUG- -5'
9181 5' -43.1 NC_002512.2 + 21785 1.13 0.051365
Target:  5'- uCUGGUUUCGACGACCAUUAUUCAAACg -3'
miRNA:   3'- -GACCAAAGCUGCUGGUAAUAAGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.