miRNA: 3'- -UCCAGGGagCCCAGGUGUAA------------ACGAGg -5'
miRNA: 3'- -UCCAGGGaGC-CCAGGUGuaaaCGAGG- -5'
miRNA: 3'- -UCCAGGGAGCCCAGGUGUAAACGAGG- -5'
Results 21 - 23 of 23 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 9182 | 3' | -55.4 | NC_002512.2 | + | 174277 | 0.72 | 0.762573 |
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Target: 5'- gGGGUCUCggGGGUUCGCGUUucaggaaaucgaUGCUCa -3' miRNA: 3'- -UCCAGGGagCCCAGGUGUAA------------ACGAGg -5' |
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| 9182 | 3' | -55.4 | NC_002512.2 | + | 110464 | 0.76 | 0.547063 |
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Target: 5'- cAGGUCCC-CGcGGUCCAC----GCUCCc -3' miRNA: 3'- -UCCAGGGaGC-CCAGGUGuaaaCGAGG- -5' |
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| 9182 | 3' | -55.4 | NC_002512.2 | + | 7134 | 1.12 | 0.003136 |
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Target: 5'- cAGGUCCCUCGGGUCCACAUUUGCUCCa -3' miRNA: 3'- -UCCAGGGAGCCCAGGUGUAAACGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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