miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9182 5' -50.6 NC_002512.2 + 208685 0.67 0.994945
Target:  5'- -gGGGGCCGCUGUCccuGGACgGGuacccGggGCu -3'
miRNA:   3'- uaCCUUGGUGAUAG---CCUGgCU-----CuuUG- -5'
9182 5' -50.6 NC_002512.2 + 149423 0.68 0.992224
Target:  5'- -gGGGACCGCggcgggggCGGGCgCGGGggGa -3'
miRNA:   3'- uaCCUUGGUGaua-----GCCUG-GCUCuuUg -5'
9182 5' -50.6 NC_002512.2 + 90737 0.68 0.991095
Target:  5'- -cGGAACCAgUccUUGGcgaacgacccgGCCGAGAAGCg -3'
miRNA:   3'- uaCCUUGGUgAu-AGCC-----------UGGCUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 44579 0.68 0.991095
Target:  5'- cUGGAACUAacGUgGGAUCGAGAAu- -3'
miRNA:   3'- uACCUUGGUgaUAgCCUGGCUCUUug -5'
9182 5' -50.6 NC_002512.2 + 166486 0.68 0.989841
Target:  5'- -cGGGACCGCggGUCGGAggaaGaAGAAGCg -3'
miRNA:   3'- uaCCUUGGUGa-UAGCCUgg--C-UCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 220208 0.68 0.989841
Target:  5'- -cGGGGCCcgACgg-CGGcCCGGGGGACg -3'
miRNA:   3'- uaCCUUGG--UGauaGCCuGGCUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 118412 0.68 0.988452
Target:  5'- cUGGAgaGCCaACUGaaGGGCCGGGcGACg -3'
miRNA:   3'- uACCU--UGG-UGAUagCCUGGCUCuUUG- -5'
9182 5' -50.6 NC_002512.2 + 124798 0.69 0.98692
Target:  5'- -cGGGuCCAgCUGaCGGAgCCGGGAGACu -3'
miRNA:   3'- uaCCUuGGU-GAUaGCCU-GGCUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 119559 0.69 0.98692
Target:  5'- -gGGGACCGgg--CGGACCGcGGGAGCc -3'
miRNA:   3'- uaCCUUGGUgauaGCCUGGC-UCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 104131 0.69 0.98692
Target:  5'- cUGG-AUCACggaCGGGCUGGGGGACg -3'
miRNA:   3'- uACCuUGGUGauaGCCUGGCUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 193678 0.69 0.985237
Target:  5'- -aGGAGggcucCCGCaGUCGGucCCGGGGGACg -3'
miRNA:   3'- uaCCUU-----GGUGaUAGCCu-GGCUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 202270 0.7 0.968498
Target:  5'- -cGGAGCgucucuccgCGCUGUgGGACCGGGgcGCc -3'
miRNA:   3'- uaCCUUG---------GUGAUAgCCUGGCUCuuUG- -5'
9182 5' -50.6 NC_002512.2 + 109066 0.71 0.954383
Target:  5'- -cGGAcccGCCGCguccCGGGuCCGAGAGACc -3'
miRNA:   3'- uaCCU---UGGUGaua-GCCU-GGCUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 99565 0.71 0.954383
Target:  5'- -cGuGAACCGCU-UCGGACCGAagccGAACa -3'
miRNA:   3'- uaC-CUUGGUGAuAGCCUGGCUc---UUUG- -5'
9182 5' -50.6 NC_002512.2 + 40655 0.71 0.954383
Target:  5'- -aGGAACCGCgAUCGuucuuuguGACCGGGcAAGCg -3'
miRNA:   3'- uaCCUUGGUGaUAGC--------CUGGCUC-UUUG- -5'
9182 5' -50.6 NC_002512.2 + 73467 0.72 0.941343
Target:  5'- -cGGAACgACUAg-GGAUCGAGGAAUc -3'
miRNA:   3'- uaCCUUGgUGAUagCCUGGCUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 193929 0.72 0.93651
Target:  5'- -cGGAcuCCGCUGaCGG-CCGGGGAACg -3'
miRNA:   3'- uaCCUu-GGUGAUaGCCuGGCUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 227213 0.72 0.931431
Target:  5'- -cGcGGACCAggAggcggCGGACCGGGAGGCg -3'
miRNA:   3'- uaC-CUUGGUgaUa----GCCUGGCUCUUUG- -5'
9182 5' -50.6 NC_002512.2 + 132089 0.72 0.92053
Target:  5'- -cGGAGCCggaGCgcUCGGACCGGGGcuCg -3'
miRNA:   3'- uaCCUUGG---UGauAGCCUGGCUCUuuG- -5'
9182 5' -50.6 NC_002512.2 + 222638 0.73 0.911097
Target:  5'- -cGGAcGCCGCUccgccgcgacggccgGcCGGGCCGAGggGCg -3'
miRNA:   3'- uaCCU-UGGUGA---------------UaGCCUGGCUCuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.