miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9183 3' -61.2 NC_002512.2 + 212106 0.66 0.795755
Target:  5'- cUCGCCGaguuccaCGGCgagaagcuggUCCccuaucaccugUGCGUCGgCGGGCa -3'
miRNA:   3'- -AGCGGCg------GCUG----------AGG-----------ACGCAGC-GUCCG- -5'
9183 3' -61.2 NC_002512.2 + 189586 0.66 0.79491
Target:  5'- -gGCCGCCGGgUCCUcgggacgacguucGUG-CGC-GGCg -3'
miRNA:   3'- agCGGCGGCUgAGGA-------------CGCaGCGuCCG- -5'
9183 3' -61.2 NC_002512.2 + 135844 0.66 0.792368
Target:  5'- gUCGUCGCCGAagagaUCCgccgcgaaaccgaGCGUC-CGGGUc -3'
miRNA:   3'- -AGCGGCGGCUg----AGGa------------CGCAGcGUCCG- -5'
9183 3' -61.2 NC_002512.2 + 211205 0.66 0.791519
Target:  5'- cCGCCGCCcacgagcucuuccuCUCCgacgaguacuacgacUGCGUCG-AGGCg -3'
miRNA:   3'- aGCGGCGGcu------------GAGG---------------ACGCAGCgUCCG- -5'
9183 3' -61.2 NC_002512.2 + 73083 0.66 0.78725
Target:  5'- -gGCCGUCcugguuCUCCUGCGUaacaAGGCg -3'
miRNA:   3'- agCGGCGGcu----GAGGACGCAgcg-UCCG- -5'
9183 3' -61.2 NC_002512.2 + 177931 0.66 0.78725
Target:  5'- gUCGCuCGgCGGCUCC-GCGUCcgacaGCuGGGUg -3'
miRNA:   3'- -AGCG-GCgGCUGAGGaCGCAG-----CG-UCCG- -5'
9183 3' -61.2 NC_002512.2 + 179506 0.66 0.78725
Target:  5'- aUCGUCGUCGGCUCagucgGCucuucgGUCGUcGGCu -3'
miRNA:   3'- -AGCGGCGGCUGAGga---CG------CAGCGuCCG- -5'
9183 3' -61.2 NC_002512.2 + 220395 0.66 0.78725
Target:  5'- -gGCCGUCGuCUaCCcGCcgcUCGCGGGCc -3'
miRNA:   3'- agCGGCGGCuGA-GGaCGc--AGCGUCCG- -5'
9183 3' -61.2 NC_002512.2 + 93961 0.66 0.78725
Target:  5'- aUGCCGuaCCGACUCaggacGUGUCGCuGcGCg -3'
miRNA:   3'- aGCGGC--GGCUGAGga---CGCAGCGuC-CG- -5'
9183 3' -61.2 NC_002512.2 + 158802 0.66 0.786393
Target:  5'- gCGUCGUCGACUucucggccgcgaaCCUGCGggaggugcugaCGCGGGg -3'
miRNA:   3'- aGCGGCGGCUGA-------------GGACGCa----------GCGUCCg -5'
9183 3' -61.2 NC_002512.2 + 105541 0.66 0.778624
Target:  5'- cUGCCcgGCCGACUCCc-CGUUGacgguCAGGCu -3'
miRNA:   3'- aGCGG--CGGCUGAGGacGCAGC-----GUCCG- -5'
9183 3' -61.2 NC_002512.2 + 148526 0.66 0.778624
Target:  5'- cCGCCGCCcGCcCCggccGCGagGgAGGCg -3'
miRNA:   3'- aGCGGCGGcUGaGGa---CGCagCgUCCG- -5'
9183 3' -61.2 NC_002512.2 + 185362 0.66 0.778624
Target:  5'- aUCGCCGUCGACUgCgacaccuucgGCGgcggcUGCgAGGCc -3'
miRNA:   3'- -AGCGGCGGCUGAgGa---------CGCa----GCG-UCCG- -5'
9183 3' -61.2 NC_002512.2 + 193970 0.66 0.778624
Target:  5'- -gGCCGCCGgcgaGCUCCUGaccgCGCucuccAGGUa -3'
miRNA:   3'- agCGGCGGC----UGAGGACgca-GCG-----UCCG- -5'
9183 3' -61.2 NC_002512.2 + 200722 0.66 0.778624
Target:  5'- cUGCCGcCCGGCggUCCgaacGgGUCGUaccGGGCg -3'
miRNA:   3'- aGCGGC-GGCUG--AGGa---CgCAGCG---UCCG- -5'
9183 3' -61.2 NC_002512.2 + 222885 0.66 0.773393
Target:  5'- cUGCgGCuCuccugcgacuucgagGGCUCCUGCGUCuGgAGGCu -3'
miRNA:   3'- aGCGgCG-G---------------CUGAGGACGCAG-CgUCCG- -5'
9183 3' -61.2 NC_002512.2 + 202037 0.66 0.769882
Target:  5'- cCGCCGguCCGGCUCgCggucGUGUCGCgAGuGCu -3'
miRNA:   3'- aGCGGC--GGCUGAG-Ga---CGCAGCG-UC-CG- -5'
9183 3' -61.2 NC_002512.2 + 181684 0.66 0.769882
Target:  5'- cCGCgGCCGGgaUCCcGCGggucagUCGCAGGa -3'
miRNA:   3'- aGCGgCGGCUg-AGGaCGC------AGCGUCCg -5'
9183 3' -61.2 NC_002512.2 + 116168 0.66 0.769882
Target:  5'- -aGCCGCUGGCgccgggcgaguUCCacGCGcUGCGGGCc -3'
miRNA:   3'- agCGGCGGCUG-----------AGGa-CGCaGCGUCCG- -5'
9183 3' -61.2 NC_002512.2 + 111172 0.66 0.769882
Target:  5'- aCGUCGCCGGCga--GCG--GCAGGCg -3'
miRNA:   3'- aGCGGCGGCUGaggaCGCagCGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.