miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9183 5' -51.6 NC_002512.2 + 175161 0.66 0.997589
Target:  5'- aGGCCUUCaGGUC-CGAGAuGUCGUa-- -3'
miRNA:   3'- gCUGGAAG-CUAGcGCUCU-CAGUAguu -5'
9183 5' -51.6 NC_002512.2 + 128050 0.67 0.994708
Target:  5'- aCGGCCccgaCGGUCGCG-GcGUCGUCGu -3'
miRNA:   3'- -GCUGGaa--GCUAGCGCuCuCAGUAGUu -5'
9183 5' -51.6 NC_002512.2 + 155461 0.67 0.992964
Target:  5'- uCGACCUgaccgUCGAcCGCGAGu-UCGUCGg -3'
miRNA:   3'- -GCUGGA-----AGCUaGCGCUCucAGUAGUu -5'
9183 5' -51.6 NC_002512.2 + 195053 0.71 0.936492
Target:  5'- gCGGCCcgCGggCGgGAGGGUCGUCc- -3'
miRNA:   3'- -GCUGGaaGCuaGCgCUCUCAGUAGuu -5'
9183 5' -51.6 NC_002512.2 + 146825 0.74 0.852954
Target:  5'- aGACCUUCGcgCGCGAG-GUCGc--- -3'
miRNA:   3'- gCUGGAAGCuaGCGCUCuCAGUaguu -5'
9183 5' -51.6 NC_002512.2 + 3525 1.06 0.01645
Target:  5'- cCGACCUUCGAUCGCGAGAGUCAUCAAc -3'
miRNA:   3'- -GCUGGAAGCUAGCGCUCUCAGUAGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.