miRNA display CGI


Results 1 - 20 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9184 5' -55.3 NC_002512.2 + 30822 0.66 0.975606
Target:  5'- aGGACgcgcuuaccguUGUAguAGugGGCcGCGCCcacGGCGa -3'
miRNA:   3'- gCCUG-----------AUAU--UCugCCGuCGUGG---CCGC- -5'
9184 5' -55.3 NC_002512.2 + 57599 0.66 0.975606
Target:  5'- uGGACUcgc-GACGGCAGaugucCCgGGCGa -3'
miRNA:   3'- gCCUGAuauuCUGCCGUCgu---GG-CCGC- -5'
9184 5' -55.3 NC_002512.2 + 153 0.66 0.975606
Target:  5'- gCGGAg---GAGGCGGCAGgaGgCGGCa -3'
miRNA:   3'- -GCCUgauaUUCUGCCGUCg-UgGCCGc -5'
9184 5' -55.3 NC_002512.2 + 4282 0.66 0.975606
Target:  5'- cCGGACgac--GACGGcCAGCuggucgaagacCCGGCGc -3'
miRNA:   3'- -GCCUGauauuCUGCC-GUCGu----------GGCCGC- -5'
9184 5' -55.3 NC_002512.2 + 106622 0.66 0.975606
Target:  5'- uGGAUguccgccggGGGGuaGCGGCGCCGGCu -3'
miRNA:   3'- gCCUGaua------UUCUgcCGUCGUGGCCGc -5'
9184 5' -55.3 NC_002512.2 + 95070 0.66 0.975606
Target:  5'- uCGGcagcaGCUG--GGGCaGCAGCgagACCGGCGu -3'
miRNA:   3'- -GCC-----UGAUauUCUGcCGUCG---UGGCCGC- -5'
9184 5' -55.3 NC_002512.2 + 21070 0.66 0.975606
Target:  5'- aGGGCgcacGGGCGGCGGUcccGCUccggGGCGa -3'
miRNA:   3'- gCCUGauauUCUGCCGUCG---UGG----CCGC- -5'
9184 5' -55.3 NC_002512.2 + 229556 0.66 0.975606
Target:  5'- gCGGAg---GAGGCGGCAGgaGgCGGCa -3'
miRNA:   3'- -GCCUgauaUUCUGCCGUCg-UgGCCGc -5'
9184 5' -55.3 NC_002512.2 + 38872 0.66 0.975606
Target:  5'- aGGGCgggGAGGCGGCgacggggagGGCGgCGGgGc -3'
miRNA:   3'- gCCUGauaUUCUGCCG---------UCGUgGCCgC- -5'
9184 5' -55.3 NC_002512.2 + 163871 0.66 0.975606
Target:  5'- aGGAUUAUuuGGCGGCA--ACCuGCGa -3'
miRNA:   3'- gCCUGAUAuuCUGCCGUcgUGGcCGC- -5'
9184 5' -55.3 NC_002512.2 + 112104 0.66 0.975606
Target:  5'- aGGACgcggcGACGGCGGCgcucuacgaccACCGGa- -3'
miRNA:   3'- gCCUGauauuCUGCCGUCG-----------UGGCCgc -5'
9184 5' -55.3 NC_002512.2 + 83438 0.66 0.975606
Target:  5'- gCGGACggcgacgGAGACGaCGGCGgggCGGCGg -3'
miRNA:   3'- -GCCUGaua----UUCUGCcGUCGUg--GCCGC- -5'
9184 5' -55.3 NC_002512.2 + 70423 0.66 0.975606
Target:  5'- gGGACcggGAGA-GGUAcUACCGGCGg -3'
miRNA:   3'- gCCUGauaUUCUgCCGUcGUGGCCGC- -5'
9184 5' -55.3 NC_002512.2 + 39600 0.66 0.975606
Target:  5'- gGGGCga-GGGAcCGGCugcugGGCACCgaGGCGg -3'
miRNA:   3'- gCCUGauaUUCU-GCCG-----UCGUGG--CCGC- -5'
9184 5' -55.3 NC_002512.2 + 10007 0.66 0.975606
Target:  5'- -------cGGGGCGGCGGguCCGGCu -3'
miRNA:   3'- gccugauaUUCUGCCGUCguGGCCGc -5'
9184 5' -55.3 NC_002512.2 + 91694 0.66 0.974861
Target:  5'- -cGACgGUAGGAUGuccgcgaugcacacGCAGC-CCGGCGg -3'
miRNA:   3'- gcCUGaUAUUCUGC--------------CGUCGuGGCCGC- -5'
9184 5' -55.3 NC_002512.2 + 96259 0.66 0.974609
Target:  5'- gGGGCguuccgccuGGCGGUcgcGGCGCCGGaCGc -3'
miRNA:   3'- gCCUGauauu----CUGCCG---UCGUGGCC-GC- -5'
9184 5' -55.3 NC_002512.2 + 100116 0.66 0.973322
Target:  5'- gGGACgagcucuccgucaccGUcguGGACGGCGGCggACCGGuCGa -3'
miRNA:   3'- gCCUGa--------------UAu--UCUGCCGUCG--UGGCC-GC- -5'
9184 5' -55.3 NC_002512.2 + 133917 0.66 0.973059
Target:  5'- aCGG-Cggcc--GCGGCGGCGgCGGCGa -3'
miRNA:   3'- -GCCuGauauucUGCCGUCGUgGCCGC- -5'
9184 5' -55.3 NC_002512.2 + 5986 0.66 0.973059
Target:  5'- gCGGACgcGUGAGGCGG-GGCGggGGCGc -3'
miRNA:   3'- -GCCUGa-UAUUCUGCCgUCGUggCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.