miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9185 5' -54.3 NC_002512.2 + 3541 1.08 0.008028
Target:  5'- cCGAAGCCCGGGUAGAAGAUCCGUCUGc -3'
miRNA:   3'- -GCUUCGGGCCCAUCUUCUAGGCAGAC- -5'
9185 5' -54.3 NC_002512.2 + 2774 0.8 0.384364
Target:  5'- gGAGGCCCGGGgccgccggcgucggGGGAGAUCCGUUc- -3'
miRNA:   3'- gCUUCGGGCCCa-------------UCUUCUAGGCAGac -5'
9185 5' -54.3 NC_002512.2 + 221254 0.8 0.405899
Target:  5'- aCGAGGCUCGGGUAGAucgaggacGGUCCGUUUa -3'
miRNA:   3'- -GCUUCGGGCCCAUCUu-------CUAGGCAGAc -5'
9185 5' -54.3 NC_002512.2 + 18358 0.79 0.45837
Target:  5'- gGAGGCCCGGGUGGccgcGGGggCCGUCc- -3'
miRNA:   3'- gCUUCGGGCCCAUC----UUCuaGGCAGac -5'
9185 5' -54.3 NC_002512.2 + 32724 0.75 0.65262
Target:  5'- aGAGGCgCGGGUGGAAGAcggCCGUg-- -3'
miRNA:   3'- gCUUCGgGCCCAUCUUCUa--GGCAgac -5'
9185 5' -54.3 NC_002512.2 + 28202 0.71 0.861726
Target:  5'- gCGAcgGGCCCGGGUacguGGGAGA-CCGcUCUc -3'
miRNA:   3'- -GCU--UCGGGCCCA----UCUUCUaGGC-AGAc -5'
9185 5' -54.3 NC_002512.2 + 32808 0.7 0.894473
Target:  5'- gCGgcGCCCGGcGgcuggAGAAGAUCCcccacugcccgcacGUCUGc -3'
miRNA:   3'- -GCuuCGGGCC-Ca----UCUUCUAGG--------------CAGAC- -5'
9185 5' -54.3 NC_002512.2 + 33515 0.7 0.896402
Target:  5'- cCGGuucGCCCGGGUGGccGAcgCCGUgUGu -3'
miRNA:   3'- -GCUu--CGGGCCCAUCuuCUa-GGCAgAC- -5'
9185 5' -54.3 NC_002512.2 + 76660 0.7 0.90269
Target:  5'- gGGAGCCCGGGacGGggGAaCCGgggCg- -3'
miRNA:   3'- gCUUCGGGCCCa-UCuuCUaGGCa--Gac -5'
9185 5' -54.3 NC_002512.2 + 135192 0.69 0.908754
Target:  5'- cCGGAGCCCccGGaGGAAGAUCCGa--- -3'
miRNA:   3'- -GCUUCGGGc-CCaUCUUCUAGGCagac -5'
9185 5' -54.3 NC_002512.2 + 25420 0.69 0.914593
Target:  5'- aCGGcgGGCCCGGGgcGggGggCCGg--- -3'
miRNA:   3'- -GCU--UCGGGCCCauCuuCuaGGCagac -5'
9185 5' -54.3 NC_002512.2 + 29465 0.69 0.914593
Target:  5'- cCGgcGUUCGGGUAGAAGGUguacucggUCGUCUc -3'
miRNA:   3'- -GCuuCGGGCCCAUCUUCUA--------GGCAGAc -5'
9185 5' -54.3 NC_002512.2 + 121705 0.69 0.920203
Target:  5'- cCGggGCCgGGGgccGGggGGUCCcUCc- -3'
miRNA:   3'- -GCuuCGGgCCCa--UCuuCUAGGcAGac -5'
9185 5' -54.3 NC_002512.2 + 44832 0.69 0.930737
Target:  5'- uCGAGGCCCGGGUcGGcguccaGGAUCCu---- -3'
miRNA:   3'- -GCUUCGGGCCCAuCU------UCUAGGcagac -5'
9185 5' -54.3 NC_002512.2 + 42607 0.68 0.944824
Target:  5'- cCGAAGCCCGGGggcacuucgAGgcGAcgUCCGcCa- -3'
miRNA:   3'- -GCUUCGGGCCCa--------UCuuCU--AGGCaGac -5'
9185 5' -54.3 NC_002512.2 + 3766 0.67 0.960473
Target:  5'- cCGcGGGCUCGGGUGGAGGG-CCGa--- -3'
miRNA:   3'- -GC-UUCGGGCCCAUCUUCUaGGCagac -5'
9185 5' -54.3 NC_002512.2 + 10261 0.67 0.962857
Target:  5'- aCGAGGCCgGGGUcGGAGAcgagccgaccgcccUCCucucgucucgucGUCUGg -3'
miRNA:   3'- -GCUUCGGgCCCAuCUUCU--------------AGG------------CAGAC- -5'
9185 5' -54.3 NC_002512.2 + 3268 0.67 0.963847
Target:  5'- gGAGGCCCGGGaggccaGGAAGGcCCGg--- -3'
miRNA:   3'- gCUUCGGGCCCa-----UCUUCUaGGCagac -5'
9185 5' -54.3 NC_002512.2 + 229939 0.67 0.969981
Target:  5'- aGggGCCCGGGcggAGAGGGagCGg--- -3'
miRNA:   3'- gCuuCGGGCCCa--UCUUCUagGCagac -5'
9185 5' -54.3 NC_002512.2 + 536 0.67 0.969981
Target:  5'- aGggGCCCGGGcggAGAGGGagCGg--- -3'
miRNA:   3'- gCuuCGGGCCCa--UCUUCUagGCagac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.