miRNA display CGI


Results 61 - 80 of 736 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 42424 0.66 0.521382
Target:  5'- aCCCuGGCUuUCCGGCUcaagGCCUacaaGGCCg -3'
miRNA:   3'- -GGGuCCGGuGGGCCGG----CGGGcg--CCGG- -5'
9186 3' -68.4 NC_002512.2 + 117315 0.66 0.504063
Target:  5'- ---cGGCCACCCGGuuGagggaCaCGGCCg -3'
miRNA:   3'- ggguCCGGUGGGCCggCgg---GcGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 62323 0.66 0.495497
Target:  5'- cCCCAacuacgagguGGCCGaggacCCCGcGCaCGUCCGggaGGCCa -3'
miRNA:   3'- -GGGU----------CCGGU-----GGGC-CG-GCGGGCg--CCGG- -5'
9186 3' -68.4 NC_002512.2 + 42049 0.66 0.503204
Target:  5'- gUCCGcgagaacGGCaACUCGGUCGCCCGCG-UCg -3'
miRNA:   3'- -GGGU-------CCGgUGGGCCGGCGGGCGCcGG- -5'
9186 3' -68.4 NC_002512.2 + 117402 0.66 0.503204
Target:  5'- uUCCGcGGCaCGCggaaggcggagagCCGGCCGUCCcggacacgGUGGCCu -3'
miRNA:   3'- -GGGU-CCG-GUG-------------GGCCGGCGGG--------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 111555 0.66 0.504063
Target:  5'- --gGGaGCCGCgaUCGGCgGCCCucuccccgcgGCGGCCg -3'
miRNA:   3'- gggUC-CGGUG--GGCCGgCGGG----------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 110777 0.66 0.504063
Target:  5'- gUCAcGGCgACUCGcucGCgGCgCGCGGCCg -3'
miRNA:   3'- gGGU-CCGgUGGGC---CGgCGgGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 82636 0.66 0.504063
Target:  5'- gCgCGGaGCCACcgCCGGCCGCagcaucacccuCCGCcGCCc -3'
miRNA:   3'- -GgGUC-CGGUG--GGCCGGCG-----------GGCGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 62571 0.66 0.504063
Target:  5'- gCCCGucGGCUucuuCCCGGUCaUCCGCcGCCu -3'
miRNA:   3'- -GGGU--CCGGu---GGGCCGGcGGGCGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 137349 0.66 0.504063
Target:  5'- aCCCc-GCgCGCCUGGgCGCacaCCGgGGCCu -3'
miRNA:   3'- -GGGucCG-GUGGGCCgGCG---GGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 130709 0.66 0.504063
Target:  5'- aCCCAGGaCGCUCaGCCGggaCGUGGCg -3'
miRNA:   3'- -GGGUCCgGUGGGcCGGCgg-GCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 18409 0.66 0.521382
Target:  5'- gCUGuGCCucgGCCUGGcCCGCgaCGCGGCCc -3'
miRNA:   3'- gGGUcCGG---UGGGCC-GGCGg-GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 120891 0.66 0.504063
Target:  5'- gUCCGcGCC-CCCGGCguccCGuCCCGCcGCCu -3'
miRNA:   3'- -GGGUcCGGuGGGCCG----GC-GGGCGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 92198 0.66 0.504063
Target:  5'- gCCCuGGCgaucgCGCCCaagaccaagucGGCCGCCgacgGCGcGCCg -3'
miRNA:   3'- -GGGuCCG-----GUGGG-----------CCGGCGGg---CGC-CGG- -5'
9186 3' -68.4 NC_002512.2 + 124523 0.66 0.507507
Target:  5'- gCCgAGGCa--CCGGCCGUcgucggucuccgagaCC-CGGCCg -3'
miRNA:   3'- -GGgUCCGgugGGCCGGCG---------------GGcGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 124613 0.66 0.512693
Target:  5'- gCCguGGCagccgaacuGCCCGGCCGacucCCCGUugacGGUCa -3'
miRNA:   3'- -GGguCCGg--------UGGGCCGGC----GGGCG----CCGG- -5'
9186 3' -68.4 NC_002512.2 + 81092 0.66 0.512693
Target:  5'- uCCCgAGGCuCGCCUacggGGcCCGCuCCGCcgacGCCg -3'
miRNA:   3'- -GGG-UCCG-GUGGG----CC-GGCG-GGCGc---CGG- -5'
9186 3' -68.4 NC_002512.2 + 75005 0.66 0.512693
Target:  5'- --aGGGCCGCCgGGUC-CCCGaaaacaGGUCg -3'
miRNA:   3'- gggUCCGGUGGgCCGGcGGGCg-----CCGG- -5'
9186 3' -68.4 NC_002512.2 + 44652 0.66 0.512693
Target:  5'- gCCgCAGGUCauggcgcacGCCgGGCUGCgCgGgGGCCu -3'
miRNA:   3'- -GG-GUCCGG---------UGGgCCGGCG-GgCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 38907 0.66 0.512693
Target:  5'- uCCCcGGCCuCCuCGGUa-CCCGCGGaCa -3'
miRNA:   3'- -GGGuCCGGuGG-GCCGgcGGGCGCCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.