miRNA display CGI


Results 61 - 80 of 736 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 82636 0.66 0.504063
Target:  5'- gCgCGGaGCCACcgCCGGCCGCagcaucacccuCCGCcGCCc -3'
miRNA:   3'- -GgGUC-CGGUG--GGCCGGCG-----------GGCGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 110777 0.66 0.504063
Target:  5'- gUCAcGGCgACUCGcucGCgGCgCGCGGCCg -3'
miRNA:   3'- gGGU-CCGgUGGGC---CGgCGgGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 111555 0.66 0.504063
Target:  5'- --gGGaGCCGCgaUCGGCgGCCCucuccccgcgGCGGCCg -3'
miRNA:   3'- gggUC-CGGUG--GGCCGgCGGG----------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 65231 0.66 0.504063
Target:  5'- aCCCAcuuucuuaGCCACCCcgaucGCCGCCUGCcGUCc -3'
miRNA:   3'- -GGGUc-------CGGUGGGc----CGGCGGGCGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 60269 0.66 0.504063
Target:  5'- aCCuGGaCCugCCGGCCGaCCUGaagaacaaGGaCCu -3'
miRNA:   3'- gGGuCC-GGugGGCCGGC-GGGCg-------CC-GG- -5'
9186 3' -68.4 NC_002512.2 + 117402 0.66 0.503204
Target:  5'- uUCCGcGGCaCGCggaaggcggagagCCGGCCGUCCcggacacgGUGGCCu -3'
miRNA:   3'- -GGGU-CCG-GUG-------------GGCCGGCGGG--------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 42049 0.66 0.503204
Target:  5'- gUCCGcgagaacGGCaACUCGGUCGCCCGCG-UCg -3'
miRNA:   3'- -GGGU-------CCGgUGGGCCGGCGGGCGCcGG- -5'
9186 3' -68.4 NC_002512.2 + 123647 0.66 0.502345
Target:  5'- aCCCGGGUauauaaCGCCgCGGCgGCCgggcucggggaaGCGGUCc -3'
miRNA:   3'- -GGGUCCG------GUGG-GCCGgCGGg-----------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 99781 0.66 0.501486
Target:  5'- uCCUcaaGGGCgcgcccuuCACUCGGCCgucggguacuacgaGCUgGCGGCCa -3'
miRNA:   3'- -GGG---UCCG--------GUGGGCCGG--------------CGGgCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 36506 0.66 0.495497
Target:  5'- aCUCGGuGUCGUCC--CCGCCCGCGGCg -3'
miRNA:   3'- -GGGUC-CGGUGGGccGGCGGGCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 71563 0.66 0.495497
Target:  5'- gUCCGGaGCgCggACUCGcGCCGgacgaCCGCGGCCu -3'
miRNA:   3'- -GGGUC-CG-G--UGGGC-CGGCg----GGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 80757 0.66 0.495497
Target:  5'- uCCCGGGUC-CCgggGGUC-CUCGCGGCUc -3'
miRNA:   3'- -GGGUCCGGuGGg--CCGGcGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 105012 0.66 0.495497
Target:  5'- aCgGGGCCgccGCCCGGUucuCGUCCG-GGUCc -3'
miRNA:   3'- gGgUCCGG---UGGGCCG---GCGGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 91763 0.66 0.495497
Target:  5'- cUCCGGGaucuCCGCCUucacccccagGGCCaGCgUGCGGCUg -3'
miRNA:   3'- -GGGUCC----GGUGGG----------CCGG-CGgGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 83917 0.66 0.495497
Target:  5'- gCCCAGGCguccagcagCGCCCGGCgcaUGUCgCGCaGCa -3'
miRNA:   3'- -GGGUCCG---------GUGGGCCG---GCGG-GCGcCGg -5'
9186 3' -68.4 NC_002512.2 + 141440 0.66 0.495497
Target:  5'- gCCCc-GCCugCUGGUccgggaCGCCUGCGGUUu -3'
miRNA:   3'- -GGGucCGGugGGCCG------GCGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 85043 0.66 0.495497
Target:  5'- gCgAGGCguCgCGGCUGCCgGCcgacacGGCCa -3'
miRNA:   3'- gGgUCCGguGgGCCGGCGGgCG------CCGG- -5'
9186 3' -68.4 NC_002512.2 + 78803 0.66 0.495497
Target:  5'- gCCCucGCgGCCCGGCCggcgccauguuGCCucaagauggCGCcGGCCg -3'
miRNA:   3'- -GGGucCGgUGGGCCGG-----------CGG---------GCG-CCGG- -5'
9186 3' -68.4 NC_002512.2 + 190548 0.66 0.495497
Target:  5'- cCUgAGGCCACgCGuaCCG-CCGCGuGCCa -3'
miRNA:   3'- -GGgUCCGGUGgGCc-GGCgGGCGC-CGG- -5'
9186 3' -68.4 NC_002512.2 + 130502 0.66 0.495497
Target:  5'- gCCCucggaGGGCCcggcGCCCGaGCCGauCCC-CGGCa -3'
miRNA:   3'- -GGG-----UCCGG----UGGGC-CGGC--GGGcGCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.