miRNA display CGI


Results 61 - 80 of 736 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 97880 0.73 0.197024
Target:  5'- gCCgAGGuCCcCCCGG-CGCCCgggGCGGCCc -3'
miRNA:   3'- -GGgUCC-GGuGGGCCgGCGGG---CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 91993 0.77 0.104003
Target:  5'- gUCCGGGUCuCCCGcGUCGCCgGCGGCg -3'
miRNA:   3'- -GGGUCCGGuGGGC-CGGCGGgCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 49229 0.74 0.164776
Target:  5'- uUCgGGGCCACCgCGGCgGCCUGCcGCa -3'
miRNA:   3'- -GGgUCCGGUGG-GCCGgCGGGCGcCGg -5'
9186 3' -68.4 NC_002512.2 + 83146 0.74 0.168531
Target:  5'- gUCgAGGUCgucggGCCCGGCgG-CCGCGGCCg -3'
miRNA:   3'- -GGgUCCGG-----UGGGCCGgCgGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 7674 0.73 0.175092
Target:  5'- cCCCGacGGCCACCCcgacGaagaaacggacgacGCCGgCCGCGGCCc -3'
miRNA:   3'- -GGGU--CCGGUGGG----C--------------CGGCgGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 102137 0.78 0.086172
Target:  5'- aCCCuGGCCGuCUaCGGCCGCgaCCGCGGCUg -3'
miRNA:   3'- -GGGuCCGGU-GG-GCCGGCG--GGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 126557 0.75 0.147105
Target:  5'- cCCCGGGCUAC---GCCGCCCG-GGCCu -3'
miRNA:   3'- -GGGUCCGGUGggcCGGCGGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 8117 0.74 0.157489
Target:  5'- gCCAGGaCACgaCGGCCGCCCaGCuGCCg -3'
miRNA:   3'- gGGUCCgGUGg-GCCGGCGGG-CGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 36408 0.74 0.160731
Target:  5'- gUCCAGGCCGucgugggccucguCCCGGagggcccgcucCCGCCaccgGCGGCCg -3'
miRNA:   3'- -GGGUCCGGU-------------GGGCC-----------GGCGGg---CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 103497 0.74 0.150495
Target:  5'- gCCCGGGgC-CCCGGgCGCUCucccggGCGGCCa -3'
miRNA:   3'- -GGGUCCgGuGGGCCgGCGGG------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 119223 0.8 0.060298
Target:  5'- aCCAGGa---CCGGCUGCCCGCGGUCg -3'
miRNA:   3'- gGGUCCggugGGCCGGCGGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 3009 0.8 0.06176
Target:  5'- uCCCGGGCCuuCCUGGCCuCCCG-GGCCu -3'
miRNA:   3'- -GGGUCCGGu-GGGCCGGcGGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 105113 0.73 0.201422
Target:  5'- aCCCGGGaCUGCgCGGUCGUCUG-GGCCg -3'
miRNA:   3'- -GGGUCC-GGUGgGCCGGCGGGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 4384 0.72 0.210474
Target:  5'- gCCCGGGaCCcCCgCGGCgGCCCcguagaucGCGGUCg -3'
miRNA:   3'- -GGGUCC-GGuGG-GCCGgCGGG--------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 70893 0.72 0.224708
Target:  5'- gCCgGGGCCGCCgCcuCCGCCCcgccGUGGCCg -3'
miRNA:   3'- -GGgUCCGGUGG-GccGGCGGG----CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 8429 0.72 0.226667
Target:  5'- aCCGcGGCCGgucggacgaccgcgcCCCGGCCGCgguccgcaUgGCGGCCg -3'
miRNA:   3'- gGGU-CCGGU---------------GGGCCGGCG--------GgCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 76695 0.72 0.210474
Target:  5'- uCCCGGguGCCGCCCuccccaccGCUGCCCGCcGCCc -3'
miRNA:   3'- -GGGUC--CGGUGGGc-------CGGCGGGCGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 25135 0.73 0.196588
Target:  5'- cCCCAGGCCgggaucgcugagcACCCGGguccggccccCCGCCC-CgGGCCc -3'
miRNA:   3'- -GGGUCCGG-------------UGGGCC----------GGCGGGcG-CCGG- -5'
9186 3' -68.4 NC_002512.2 + 41585 0.72 0.205905
Target:  5'- aCCUcguggaAGGCCACCCGGuuGCC---GGCCg -3'
miRNA:   3'- -GGG------UCCGGUGGGCCggCGGgcgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 90402 0.72 0.205905
Target:  5'- aCCguGuCCGCgUGGgCGUCCGCGGCCa -3'
miRNA:   3'- -GGguCcGGUGgGCCgGCGGGCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.